View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15232_low_11 (Length: 316)
Name: NF15232_low_11
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15232_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 51740129 - 51739814
Alignment:
| Q |
1 |
agtataaagttataaattgaataaccaagtttatgaatcaacgttctagcagtcttgccttctttaggaaatagcaatccaatnnnnnnncaatgaataa |
100 |
Q |
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| T |
51740129 |
agtataaagttataaattgaataaccaagtttatgaatcaacgttctagcagttttgccttctttaggaaatagcaatccaataaaaaaacaatgaataa |
51740030 |
T |
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| Q |
101 |
tactattgtaattccatatttctataatcatcgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttttggtttctatt |
200 |
Q |
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| T |
51740029 |
tactattgtaattccatatttctataatcattgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttttggtttctatt |
51739930 |
T |
|
| Q |
201 |
tcttgtatttaaccaaatggctaagtatctattcataagaaccacaaaacttgtaagaatgagacaacttaaaccctttgaagcttgtgctgcattatac |
300 |
Q |
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| T |
51739929 |
tcttgtatttaaccaaatggctaagtatctattcataagaaccacaaaacttgtaagaatgagacaacttaaaccctttgaagcttgtgccgcattatac |
51739830 |
T |
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| Q |
301 |
ttcttatcatccatct |
316 |
Q |
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| T |
51739829 |
ttcttatcatccatct |
51739814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 10200799 - 10200578
Alignment:
| Q |
6 |
aaagttataaattgaataaccaagtttatgaatcaacgttctagcagtcttgccttctttaggaaatagcaatccaatnnnnnnncaatgaataatacta |
105 |
Q |
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| T |
10200799 |
aaagttataaattgaataaccaagtttttgtagcaatgttctagctgttttaccttccttaggaaacaataatccaataatgaaacaactaataatacta |
10200700 |
T |
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| Q |
106 |
ttgtaattccatatttctataatcatcgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttttggtttctatttcttg |
205 |
Q |
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| T |
10200699 |
ttgtagccaaaaatttctataactattgagctagttagaagcaaaaaaagtattagtaatagttcagtagcttttaggtatttttggtttctatttcttg |
10200600 |
T |
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| Q |
206 |
tatttaaccaaatggctaagta |
227 |
Q |
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| T |
10200599 |
agtttaaccaaacggctaagta |
10200578 |
T |
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