View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15232_low_12 (Length: 254)
Name: NF15232_low_12
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15232_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35354908 - 35355149
Alignment:
| Q |
1 |
tgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35354908 |
tgttcatcaaaaaatcttctgtggctgcactatatggctatgtctttttcattgatttcatgaacaacatgggtcattgcaactttgagttcattcctaa |
35355007 |
T |
|
| Q |
101 |
gaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaatgagcttcctaatttctagtgacattccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
35355008 |
gaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaacgagcttcctaatttctagtcacattccat |
35355107 |
T |
|
| Q |
201 |
atgctaattgtttattttgtccgtgatatatttccacaggtt |
242 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35355108 |
atgctaattgtttattttctccgtgatatatttccacaggtt |
35355149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 35380914 - 35381071
Alignment:
| Q |
1 |
tgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaa |
100 |
Q |
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|||||||||| |||||||| ||||||||| | | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35380914 |
tgttcatcaataaatcttccgtggctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaa |
35381013 |
T |
|
| Q |
101 |
gaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
158 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35381014 |
gaaactcctctcttactttcccattttaaagtatctctcatacacaccatcgtaagtt |
35381071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 35370352 - 35370509
Alignment:
| Q |
1 |
tgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35370352 |
tgttcatcaaaaaatcatctgtggctgcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaa |
35370451 |
T |
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| Q |
101 |
gaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
158 |
Q |
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||| ||| |||| ||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
35370452 |
gaagctcttctcatactttccccaattgaagtatctctcttacacaccatcgtaagtt |
35370509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 19630230 - 19630111
Alignment:
| Q |
39 |
tatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctct |
138 |
Q |
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||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| | ||||||||||||| |
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| T |
19630230 |
tatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttcccctattgaagtatctct |
19630131 |
T |
|
| Q |
139 |
catacacaccatcgtaagtt |
158 |
Q |
| |
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| |||||||||||||||||| |
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| T |
19630130 |
cgtacacaccatcgtaagtt |
19630111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 19684558 - 19684715
Alignment:
| Q |
1 |
tgttcatcaaaaaatcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaa |
100 |
Q |
| |
|
||||||| |||||||| ||||| |||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19684558 |
tgttcatgaaaaaatcgagtgtggttgcattgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaa |
19684657 |
T |
|
| Q |
101 |
gaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
158 |
Q |
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||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
19684658 |
gaaactcttctcctactttccccaattgaagtatctcacatacacaccatcgtaagtt |
19684715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 2251396 - 2251453
Alignment:
| Q |
47 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
104 |
Q |
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|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
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|
| T |
2251396 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2251453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 2256801 - 2256744
Alignment:
| Q |
47 |
ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa |
104 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || ||||||||| ||||||||||| |
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| T |
2256801 |
ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa |
2256744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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