View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15232_low_14 (Length: 224)
Name: NF15232_low_14
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15232_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 31413077 - 31413223
Alignment:
| Q |
53 |
tgatcatgtggagcaagatatcatattggtttgatacacacatttaatgcaccattggaatatggaaggggaaaatttgaatttcaaaccaatgtggtga |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31413077 |
tgatcatgtggagcaagatatcatattggtttgatacacacatttaatgcaccattggaatatggaaggggaaaatttgaatttcaaaccaatgtggtga |
31413176 |
T |
|
| Q |
153 |
accgtgcaagtcaaataagagtaaatgcaattaacccagcattaaca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31413177 |
accgtgcaagtcaaataagagtaaatgcaattaacccagcattaaca |
31413223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 38014642 - 38014510
Alignment:
| Q |
67 |
aagatatcatattggtttgatacacacatttaatgcaccattggaatatggaaggggaaaatttgaatttcaaaccaatgtgg-tgaaccgtgcaagtca |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38014642 |
aagatatcatattggtttgatacacacatttaatgcgccattggaatatggaagagg-aaatttgaatttcaaaccaatgtggttgaaccgtgcaagtca |
38014544 |
T |
|
| Q |
166 |
aataagagtaaatgcaattaacccagcattaaca |
199 |
Q |
| |
|
||||| | |||||||||| ||||||||||||||| |
|
|
| T |
38014543 |
aataacaataaatgcaatcaacccagcattaaca |
38014510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University