View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15232_low_15 (Length: 216)

Name: NF15232_low_15
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15232_low_15
NF15232_low_15
[»] scaffold0667 (2 HSPs)
scaffold0667 (1-137)||(4135-4266)
scaffold0667 (136-197)||(3841-3902)
[»] chr2 (11 HSPs)
chr2 (1-138)||(9320660-9320795)
chr2 (1-137)||(9328280-9328412)
chr2 (60-137)||(9315709-9315785)
chr2 (61-134)||(10371532-10371604)
chr2 (1-37)||(9274277-9274313)
chr2 (72-131)||(12019264-12019323)
chr2 (1-43)||(7115998-7116040)
chr2 (136-198)||(9320425-9320487)
chr2 (1-50)||(12006447-12006496)
chr2 (1-38)||(9315795-9315832)
chr2 (1-50)||(12012878-12012927)
[»] chr1 (3 HSPs)
chr1 (22-112)||(29468109-29468199)
chr1 (61-129)||(29453663-29453730)
chr1 (61-130)||(29443680-29443748)


Alignment Details
Target: scaffold0667 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 4266 - 4135
Alignment:
Q  1 aaggagaatcatacaagcaagagcaagaaaaggtactttttattcattatcctagtttattgagtttttgctatgtattagttaatatccagttcaatgg 100  Q
    ||||||||||||||| ||||||||||||||||||||||   ||| ||||||  ||||| || |||||||||| ||||| ||||||||||  |||||||||    
T  4266 aaggagaatcatacatgcaagagcaagaaaaggtactt---attgattatcg-agttttttcagtttttgctgtgtataagttaatatct-gttcaatgg 4172  T
Q  101 acccatcatatggtttatgcagttaaactctgtgcta 137  Q
    |||||||||||| |||||  |||||||||||||||||    
T  4171 acccatcatatgatttatttagttaaactctgtgcta 4135  T

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Target: scaffold0667; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 3902 - 3841
Alignment:
Q  136 tatgaattgacaacaatttatgcaatgtgacagcgcattcttctctttgcgtcatgtcattt 197  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||    
T  3902 tatgaattgacaacaatgtatgcaatgtgacagcaaattcttctctttgcatcatgtcattt 3841  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 9320795 - 9320660
Alignment:
Q  1 aaggagaatcatacaagcaagagcaagaaaaggtactttttattcattatcctagtttattgagtttttgctatgtattagttaatatccagttcaatgg 100  Q
    |||||||||| |||||||||||||| || ||||||||| || || ||||| ||||||| |||||||||||||||||||||||| || | || ||||||||    
T  9320795 aaggagaatcgtacaagcaagagcatgagaaggtacttgtt-ttgattatactagttttttgagtttttgctatgtattagttgatgt-caattcaatgg 9320698  T
Q  101 acccatcatatggtttatgcagttaaactctgtgctat 138  Q
    |||||||||||| | |||  ||||||||||| ||||||    
T  9320697 acccatcatatgatatattaagttaaactctatgctat 9320660  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 9328412 - 9328280
Alignment:
Q  1 aaggagaatcatacaagcaagagcaagaaaaggtactttttattcattatcctagtttattgagtttttgctatgtattagttaatatccagttcaatgg 100  Q
    |||||||||| ||||||||||||||||| ||||||||| || || |||||   ||||| ||||||||||||||||||| |||| || || | ||||||||    
T  9328412 aaggagaatcgtacaagcaagagcaagagaaggtacttctt-ttgattatg--agttttttgagtttttgctatgtataagttgatgtcaa-ttcaatgg 9328317  T
Q  101 acccatcatatggtttatgcagttaaactctgtgcta 137  Q
    |||| ||||||| | |||| ||||||||||| |||||    
T  9328316 acccgtcatatgatatatgaagttaaactctatgcta 9328280  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 9315785 - 9315709
Alignment:
Q  60 ttgagtttttgctatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactctgtgcta 137  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||||||||| | || | ||||||||||| |||||    
T  9315785 ttgagtttttgctatgtataagttaatgtc-agttcaatggacccatcatatgatataagtagttaaactctatgcta 9315709  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 10371604 - 10371532
Alignment:
Q  61 tgagtttttgctatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactctgtg 134  Q
    |||||||||| | ||||| |||||||||| ||||||||||| |||||||||  | |||||||||||||||||||    
T  10371604 tgagtttttgttgtgtataagttaatatc-agttcaatggatccatcatattatatatgcagttaaactctgtg 10371532  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9274313 - 9274277
Alignment:
Q  1 aaggagaatcatacaagcaagagcaagaaaaggtact 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  9274313 aaggagaatcatacaagcaagagcaagaaaaggtact 9274277  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 12019264 - 12019323
Alignment:
Q  72 tatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactct 131  Q
    ||||||| |||||| ||||| |||||||||||||||||||| | |||| |||||||||||    
T  12019264 tatgtataagttaacatccaattcaatggacccatcatatgatatatgtagttaaactct 12019323  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7115998 - 7116040
Alignment:
Q  1 aaggagaatcatacaagcaagagcaagaaaaggtactttttat 43  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  7115998 aaggagaatcatacaagcaagagcaagagaaggtacttcttat 7116040  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 9320487 - 9320425
Alignment:
Q  136 tatgaattgacaacaatttatgcaatgtgacagcgcattcttctctttgcgtcatgtcatttt 198  Q
    |||||||||||| |||| ||||| |||||| |||  |||||||||||||| ||||||||||||    
T  9320487 tatgaattgacagcaatgtatgctatgtgatagcaaattcttctctttgcatcatgtcatttt 9320425  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12006447 - 12006496
Alignment:
Q  1 aaggagaatcatacaagcaagagcaagaaaaggtactttttattcattat 50  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||| |||||    
T  12006447 aaggagaatcgtacaagcaagagcaagagaaggtacttcttattgattat 12006496  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9315832 - 9315795
Alignment:
Q  1 aaggagaatcatacaagcaagagcaagaaaaggtactt 38  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  9315832 aaggagaatcatacaagcaagaacaagagaaggtactt 9315795  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12012878 - 12012927
Alignment:
Q  1 aaggagaatcatacaagcaagagcaagaaaaggtactttttattcattat 50  Q
    |||| ||||||| ||||||||||||||| ||||||||| ||||| |||||    
T  12012878 aaggggaatcattcaagcaagagcaagagaaggtacttcttattgattat 12012927  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 29468109 - 29468199
Alignment:
Q  22 agcaagaaaaggtactttttattcattatcctagtttattgagtttttgctatgtattagttaatatc-cagttcaatggacccatcatatg 112  Q
    ||||||| ||||||||| ||||| ||| ||  ||||| ||||||||||| ||||||| |||||||||| ||||| |||||||| ||||||||    
T  29468109 agcaagagaaggtacttcttattgattgtctgagttttttgagtttttgttatgtataagttaatatcacagtt-aatggacctatcatatg 29468199  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 29453663 - 29453730
Alignment:
Q  61 tgagtttttgctatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaact 129  Q
    |||||||||||| ||||| ||||||| || |||||||| || |||||||||| | ||||||||||||||    
T  29453663 tgagtttttgctctgtataagttaatttc-agttcaatagatccatcatatgatatatgcagttaaact 29453730  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 29443680 - 29443748
Alignment:
Q  61 tgagtttttgctatgtattagttaatatccagttcaatggacccatcatatggtttatgcagttaaactc 130  Q
    ||||||||| || ||||| |||||||||| | |||||||||||||||||||| | |||  ||||||||||    
T  29443680 tgagttttttctttgtataagttaatatcaa-ttcaatggacccatcatatgatatatctagttaaactc 29443748  T

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