View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15232_low_16 (Length: 216)
Name: NF15232_low_16
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15232_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 51740378 - 51740163
Alignment:
| Q |
1 |
catgaattacctacctttgctgctgaaccaacaaccagaaagtcggcataacctctagtgttcaatataaatccaagaaaaatcccttcacttgtaggaa |
100 |
Q |
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| T |
51740378 |
catgaattacctacctttgctgctgaaccaacgactagaaagtcggcataacctctagtgttcaatataaatccaagaaaaatcccttcacttgtaggaa |
51740279 |
T |
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| Q |
101 |
tatgaaggtaatgacaaactaagagagttccaccaagcttgcttccaatgctcagcaaaatcaatatgacagtattggttatcatactcaatttcttaaa |
200 |
Q |
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| T |
51740278 |
tatgaaggtaatgacaaactaagagagttccaccaagcttgcttccaatgctcagcaaaatcaatatgacagtattggttatcatactcaatttcttaaa |
51740179 |
T |
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| Q |
201 |
agcatttataatgtca |
216 |
Q |
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| T |
51740178 |
agcatttataatgtca |
51740163 |
T |
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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 10201008 - 10200886
Alignment:
| Q |
46 |
gcataacctctagtgttcaatataaatccaagaaaaatcccttcacttgtaggaatatgaaggtaatgacaaactaagagagttccaccaagcttgcttc |
145 |
Q |
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| T |
10201008 |
gcatatcctctagtgttcaacatgaagccaagaaaaatcccttcatttgtaggaatatgaaggtaacgacaaactataagagttccgccgagtttgctac |
10200909 |
T |
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| Q |
146 |
caatgctcagcaaaatcaatatg |
168 |
Q |
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| T |
10200908 |
caatgctcaacaagatcaatatg |
10200886 |
T |
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