View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15232_low_17 (Length: 201)

Name: NF15232_low_17
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15232_low_17
NF15232_low_17
[»] chr6 (6 HSPs)
chr6 (17-181)||(12904945-12905109)
chr6 (17-181)||(12930035-12930199)
chr6 (17-181)||(12897324-12897488)
chr6 (17-181)||(12955837-12956001)
chr6 (17-176)||(12946405-12946564)
chr6 (62-181)||(12955559-12955678)
[»] chr2 (1 HSPs)
chr2 (17-181)||(17925692-17925856)
[»] chr5 (16 HSPs)
chr5 (17-176)||(10562791-10562950)
chr5 (17-176)||(10719184-10719343)
chr5 (17-176)||(10749301-10749460)
chr5 (17-176)||(10742988-10743147)
chr5 (26-176)||(10765410-10765560)
chr5 (17-162)||(11050158-11050303)
chr5 (17-162)||(9838614-9838759)
chr5 (37-162)||(10548581-10548706)
chr5 (36-162)||(10609488-10609614)
chr5 (99-162)||(10590795-10590858)
chr5 (26-161)||(10578786-10578921)
chr5 (99-162)||(10598867-10598930)
chr5 (16-64)||(7190878-7190926)
chr5 (123-158)||(10592729-10592764)
chr5 (123-162)||(10602531-10602570)
chr5 (17-61)||(19608151-19608195)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 12905109 - 12904945
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
12905109 aactcgttcatgcatggggctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagcattgtatgggtcactagttatt 12905010  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgccgtaat 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12905009 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgccgtaat 12904945  T

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Target: chr6; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 12930199 - 12930035
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    |||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
12930199 aactcgttcatgcatggggctacatgtgattccatgccacttgcagaagtggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 12930100  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgccgtaat 181  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
12930099 gattctttgaatttgagcaatgccagatgatcagtttgctttcctattgcagccactgccctaat 12930035  T

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Target: chr6; HSP #3
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 12897488 - 12897324
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  |||    
12897488 aactcgttcatgcatggggctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagcattgtatgggtcactggaaatt 12897389  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgccgtaat 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
12897388 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccaatgccctaat 12897324  T

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Target: chr6; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 12956001 - 12955837
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  |||    
12956001 aactcgttcatgcatggggctgcatgtgattccttgccacttgcagaaatggatggaagaattccaagattcaagagcattgtatgggtcacttgaaatt 12955902  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgccgtaat 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
12955901 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagtcattgccttaat 12955837  T

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Target: chr6; HSP #5
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 12946564 - 12946405
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||  |||||||||||||| |  |||    
12946564 aactcgttcatgcatggggctgcatgtgattccatgccacttgcagaagtgaatggatgaattccaagattcaagagctttgtatgggtcactggaaatt 12946465  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgcc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12946464 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgcc 12946405  T

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Target: chr6; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 12955678 - 12955559
Alignment:
62 gaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttattgattctttgaatttgagcaatgccaaatgatcagtttggtttcct 161  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
12955678 gaaatggatggaagaattccaagattcaagagcattgtatgggtcactagaaattgattctttgaatttgagcaatgccaaatgatcagtttggtttcct 12955579  T
162 attgcagccactgccgtaat 181  Q
    ||||||| ||||||||||||    
12955578 attgcagtcactgccgtaat 12955559  T

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Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 17925692 - 17925856
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  |||    
17925692 aactcgttcatgcatggggctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagctttgtatgggtcactagaaatt 17925791  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgccgtaat 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
17925792 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgccctaat 17925856  T

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Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 10562950 - 10562791
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    ||||| || |||||||||  |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| | ||||    
10562950 aactctttgatgcatggggttgcaagtgattccctgccacttgcagaagtggatggaagaattccaagattcaagagcattgtatggatcactggatatt 10562851  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgcc 176  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||    
10562850 gattctttgaatttgagcaatgctaaatgatctgtttggtttcctaatgcagccactgcc 10562791  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 10719184 - 10719343
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |  ||||| ||||| ||||||    
10719184 aactctttcatgcatggggctgcatgtgattccatgccacttgcagaagtggatggaagaattccaagattcaagagcttcatatggatcactggttatt 10719283  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgcc 176  Q
     |||||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||    
10719284 cattctttgaatttgagcaatgctaaatgatctgtttggttacctaatgcagccactgcc 10719343  T

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Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 10749301 - 10749460
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || | ||||||||| | ||||    
10749301 aactctttcatgcatgggtttgcatgtgattccatgccacttgcagaagtggatggaagaattccaagattcaagagctttatttgggtcactcgatatt 10749400  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgcc 176  Q
    |||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||||    
10749401 gattctttaaatttgtgcaatgccaaatgatctgtttggtttcctaatgcagccactgcc 10749460  T

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Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 10742988 - 10743147
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    ||||| || |||||||||  ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||  || ||||| ||||| | ||||    
10742988 aactctttgatgcatggggttgcatgtgattccataccacttgcagaagtggatggaagaattccaagactcaagagctttatatggatcacttgatatt 10743087  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgcc 176  Q
    |||||||||||||||||||||||||||||||| | ||||||||||| |  ||||||||||    
10743088 gattctttgaatttgagcaatgccaaatgatctgattggtttcctaattgagccactgcc 10743147  T

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Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 10765410 - 10765560
Alignment:
26 atgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttattgattctttg 125  Q
    ||||||| | ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||  || ||||| ||||| | |||||||||||||    
10765410 atgcatgaggctgcatgtgattccatgccactttcaaaagtggatggaagaattccaagattcaagagctttatatggatcacttgatattgattctttg 10765509  T
126 aatttgagcaatgccaaatgatcagtttggtttcctattgcagccactgcc 176  Q
    ||||||||||||||||| ||||| | ||||||||||| |  ||||||||||    
10765510 aatttgagcaatgccaattgatctgattggtttcctaattgagccactgcc 10765560  T

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Target: chr5; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 11050158 - 11050303
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttatt 116  Q
    ||||| || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | ||||||||    ||||    
11050158 aactctttgatgcatgaggctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagctccatttgggtcacggtatatt 11050257  T
117 gattctttgaatttgagcaatgccaaatgatcagtttggtttccta 162  Q
    | |||||||||||| | |||||| |||||||| |||||||||||||    
11050258 gtttctttgaatttaatcaatgcaaaatgatctgtttggtttccta 11050303  T

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Target: chr5; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 9838614 - 9838759
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattc-aagagt--attgtatgggtcactagtt 113  Q
    ||||| || |||||||||  ||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||| |  |||   ||||||||| | |    
9838614 aactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatt---tgggtcactggat 9838710  T
114 attgattctttgaatttgagcaatgccaaatgatcagtttggtttccta 162  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||||    
9838711 attgattctttgaattggagcaatgcaagatgatcagtttggtttccta 9838759  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 10548706 - 10548581
Alignment:
37 tgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttattgattctttgaatttgagcaa 136  Q
    |||| |||||||||||||| ||||| |||||||| |||  ||||||||| |||||  |  | | ||||||||| ||||| ||||| |||||||| |||||    
10548706 tgcacgtgattccatgccagttgcaaaaatggatagaaccattccaagaatcaagcattctatgtgggtcactggttatagattccttgaatttaagcaa 10548607  T
137 tgccaaatgatcagtttggtttccta 162  Q
    ||  | ||||||||||||||||||||    
10548606 tgatagatgatcagtttggtttccta 10548581  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 10609614 - 10609488
Alignment:
36 ctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattc-aagagt--attgtatgggtcactagttattgattctttgaatttga 132  Q
    |||||||||| |||| ||||||| || |||||||||||| |||||||||| || |||| |  |||   ||| ||| | | |||||||||||||||||| |    
10609614 ctgcatgtgactccacgccacttacataaatggatggaaaaattccaagaatctaagactccatt---tggatcattggatattgattctttgaatttaa 10609518  T
133 gcaatgccaaatgatcagtttggtttccta 162  Q
    |||||| ||||| |||||||||||||||||    
10609517 gcaatgacaaataatcagtttggtttccta 10609488  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 10590795 - 10590858
Alignment:
99 tatgggtcactagttattgattctttgaatttgagcaatgccaaatgatcagtttggtttccta 162  Q
    ||||||||||||| |||| |||  ||||||| |||||||||||||||||| |||||||||||||    
10590795 tatgggtcactagatattaattgcttgaattggagcaatgccaaatgatcggtttggtttccta 10590858  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 10578921 - 10578786
Alignment:
26 atgcatgggcctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaagagtattgtatgggtcactagttattgattctttg 125  Q
    |||| |||| ||||||  ||||||| |||| ||||| || ||| | |||| ||||||||| || ||| ||   ||||| ||||||| ||||||||  |||    
10578921 atgcttgggactgcatacgattccaggccatttgcaaaagtgggttgaagcattccaagaatctagaataccatatggatcactagatattgattgcttg 10578822  T
126 aatttgagcaatgccaaatgatcagtttggtttcct 161  Q
    |||| |||||| || |||||||| ||||||||||||    
10578821 aattggagcaaagcgaaatgatcggtttggtttcct 10578786  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 10598930 - 10598867
Alignment:
99 tatgggtcactagttattgattctttgaatttgagcaatgccaaatgatcagtttggtttccta 162  Q
    ||||||||||||| || | |||  ||||||| |||||| |||||||||||||||||||||||||    
10598930 tatgggtcactagatactaattggttgaattggagcaaagccaaatgatcagtttggtttccta 10598867  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 7190926 - 7190878
Alignment:
16 caactcgttcatgcatgggcctgcatgtgattccatgccacttgcagaa 64  Q
    |||||| || ||||||||| |||||||||||||||| ||||||||||||    
7190926 caactctttgatgcatgggactgcatgtgattccataccacttgcagaa 7190878  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 10592764 - 10592729
Alignment:
123 ttgaatttgagcaatgccaaatgatcagtttggttt 158  Q
    ||||||||||||||||||| ||||||||||||||||    
10592764 ttgaatttgagcaatgccagatgatcagtttggttt 10592729  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 10602570 - 10602531
Alignment:
123 ttgaatttgagcaatgccaaatgatcagtttggtttccta 162  Q
    ||||||| |||||| |||||||||||||||||||||||||    
10602570 ttgaattggagcaaagccaaatgatcagtttggtttccta 10602531  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 19608151 - 19608195
Alignment:
17 aactcgttcatgcatgggcctgcatgtgattccatgccacttgca 61  Q
    ||||| || ||||||||| |||||||||||||||||||| |||||    
19608151 aactctttgatgcatggggctgcatgtgattccatgccaattgca 19608195  T

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