View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15232_low_4 (Length: 519)
Name: NF15232_low_4
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15232_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 34 - 503
Target Start/End: Original strand, 19154716 - 19155185
Alignment:
| Q |
34 |
atggaaatcacaattgcagttatgttgcgatccataatattacgaaaactatgatgtatcatgttatttcaactaacctgtccaccggtatcagggtacc |
133 |
Q |
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| T |
19154716 |
atggcaatcacaatcgcagttatgttgcgatccctaatattacgaaaactatgatgtatcatgttatttcaactaacctgtccaccggtatcagggtatc |
19154815 |
T |
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| Q |
134 |
ccaagacattatcttgggcaaagtaaccatgtggagaaaggatgacaacattaaagaccatagggattcttccaaggaatttctcaagggtgaaaggatc |
233 |
Q |
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| T |
19154816 |
ccaagacattatcttgggcgaagtaaccatgtggagaaaggatgacaacattaaagaccatagggattcttccaaggaatttctcgagggtgaaaggatc |
19154915 |
T |
|
| Q |
234 |
aggtgcctcgagaagatccaatagaagctgaatcatttcgaggacacgctcggcagtgtcaccccaccctctctccaaaccactatcctggaatttgtgt |
333 |
Q |
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| T |
19154916 |
aggtgcctcgagaagatccaatagaagctggatcatttcgaggacacgctcggccgtgtctccccaccctctctccaaaccactatcctggaatttgtgt |
19155015 |
T |
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| Q |
334 |
tcaaattccgagtagggtgtttcgggagcaattgtgcgaagataatcttctgcagttctcaaaacatgttgaagtgaatccagattttgaattctgtcat |
433 |
Q |
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| T |
19155016 |
tcaaattccgagtaaggtgtttcgggagcaattatgcgaagataatcttctgcagttctcaaaacatgttgaagtgaatccagattttgaattctgtcat |
19155115 |
T |
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| Q |
434 |
tcaccatcatagtctgcaataatcaaaaccataattcagtaaaatcaaaagcacaacgcgattaataaat |
503 |
Q |
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| T |
19155116 |
tcaccatcatagtctgcaataatcaaaaccataattcagtaaaatcaaaaacacaacgtgattaataaat |
19155185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 104 - 451
Target Start/End: Complemental strand, 51651132 - 51650785
Alignment:
| Q |
104 |
aactaacctgtccaccggtatcagggtaccccaagacattatcttgggcaaagtaaccatgtggagaaaggatgacaacattaaagaccatagggattct |
203 |
Q |
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|||||||||| || || ||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
51651132 |
aactaacctggcctccagtatcagggtatcccaagacatcatcttgagcaaagtaaccatgaggagaaaggatgacaacattaaagaccatggggattct |
51651033 |
T |
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| Q |
204 |
tccaaggaatttctcaagggtgaaaggatcaggtgcctcgagaagatccaatagaagctgaatcatttcgaggacacgctcggcagtgtcaccccaccct |
303 |
Q |
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| T |
51651032 |
atcaaggaaagtctcaagggtgcaagggtcgggagcctcgagaagatccaagagaagttggatggactcgaggacgcgctctgcggtgtctccccaacct |
51650933 |
T |
|
| Q |
304 |
ctctccaaaccactatcctggaatttgtgttcaaattccgagtagggtgtttcgggagcaattgtgcgaagataatcttctgcagttctcaaaacatgtt |
403 |
Q |
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| T |
51650932 |
ctctccaaaccaatctcctggaacctgtgttcaaattctgagtatggtgtttcaggatcaattgtgcttagatactcttcagctttcctcagaacatgtt |
51650833 |
T |
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| Q |
404 |
gaagtgaatccagattttgaattctgtcattcaccatcatagtctgca |
451 |
Q |
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|||| ||||| | ||||||||||||||||||| ||||| ||||||| |
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| T |
51650832 |
gaagagaatcagggttttgaattctgtcattcaacatcaatgtctgca |
51650785 |
T |
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