View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15232_low_5 (Length: 501)
Name: NF15232_low_5
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15232_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 55869742 - 55870207
Alignment:
| Q |
18 |
taattatgatactatctttctttaatagtaatttactacttccctatctcctgtatggtaaccactgaggattagcacaggtgattggtgcgaannnnnn |
117 |
Q |
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| T |
55869742 |
taattatgatactatctttctttaatagtaatttactacttccctatctcctgtatggtaaccactgaggattagcacaggtgattggtgcgaagtgtgt |
55869841 |
T |
|
| Q |
118 |
nnnnnnngtaaattccaggaactgattttgattcatactgattacaatattatagcaggataaaaaataaatatacctgctcaacccaataatggtatgt |
217 |
Q |
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| T |
55869842 |
gtgtgtggtaaattccgggaactgattttgattcatactgattacaatattatagcaggataaaaaataaatatacctgctcaacccaataatggtatgt |
55869941 |
T |
|
| Q |
218 |
atagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatttggatcaaagtttttagatattagaggg |
317 |
Q |
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| T |
55869942 |
atagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatttggatcaaagtttttagatattagaggg |
55870041 |
T |
|
| Q |
318 |
tgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctactgctccgttgacttttccattcatgtcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55870042 |
tgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctactgctccgttgacttttccattcatgtcaa |
55870141 |
T |
|
| Q |
418 |
tatcccatagaggtgaaagatcagtttgtaccacaatgtcattgtcgaggaagaccaccttgtcaa |
483 |
Q |
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| T |
55870142 |
tatcccatagaggtgaaagatcagtttgtaccacaatgtcattgtccaggaagaccaccttgtcaa |
55870207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 197 - 418
Target Start/End: Complemental strand, 31536557 - 31536346
Alignment:
| Q |
197 |
ctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaa-tgttcatgccataagcccaagcacattcatttggatc |
295 |
Q |
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| T |
31536557 |
ctcaaccccataatggtatgtatggcttatattggtcttcctccatgcctcaaggtaaaaaaatgttcatgct-----------cacattcatttggatc |
31536469 |
T |
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| Q |
296 |
aaagtttttagatattagagggtgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctactgctccg |
395 |
Q |
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| T |
31536468 |
aaaacttttggatattagagggtgggagaagtacaaatagcttttcaacctctttgagatcacaagtttatcttcccctttgtatggttctactactcca |
31536369 |
T |
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| Q |
396 |
ttgacttttccattcatgtcaat |
418 |
Q |
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|||||||||||||| |||||||| |
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| T |
31536368 |
ttgacttttccattaatgtcaat |
31536346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 190 - 480
Target Start/End: Original strand, 34674578 - 34674868
Alignment:
| Q |
190 |
atacctgctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatt |
289 |
Q |
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|||||||| ||||||||| ||| ||| ||| ||||||||||||| ||||||||||||| | |||| ||||||||||||||| |||||||||||||| || |
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| T |
34674578 |
atacctgcgcaacccaatgatgatatttattgcttatattggtcctcctccaagcttccaaatcaaaaatgttcatgccataggcccaagcacattcgtt |
34674677 |
T |
|
| Q |
290 |
tggatcaaagtttttagatattagagggtgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctact |
389 |
Q |
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|||| || |||| ||||||||||||||| || ||||||||||| ||||||||| | || ||||||||| || |||| || ||||||||||| ||| |
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| T |
34674678 |
gggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatcacaaacttgtcttctccattgcatgtttccact |
34674777 |
T |
|
| Q |
390 |
gctccgttgacttttccattcatgtcaatatcccatagaggtgaaagatcagtttgtaccacaatgtcattgtcgaggaagaccaccttgt |
480 |
Q |
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| T |
34674778 |
gctccattcacttttccattcatgtcaatgtcccacagaggtgtaagatcagtttgtatcacaatgtcatcgtcgaggaagaccaccttgt |
34674868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 12862807 - 12862763
Alignment:
| Q |
258 |
atgttcatgccataagcccaagcacattcatttggatcaaagttt |
302 |
Q |
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| T |
12862807 |
atgttcatgccatatgcccaaccacaagcatttggatcaaagttt |
12862763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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