View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15232_low_8 (Length: 386)
Name: NF15232_low_8
Description: NF15232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15232_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 35870440 - 35870071
Alignment:
| Q |
1 |
gcaaaggctatgactttacaaactcatcaacatgctccaagaaaacaatctgttctgttacatcaaccaagcaccaaattggttagtgaggaaaagaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35870440 |
gcaaaggctatgactttacaaactcatcaacatgctccaagaaaacaatctgttctgttacaacaaccaagcaccaaattggttagtgaggaaaagaact |
35870341 |
T |
|
| Q |
101 |
cttttgttaacaatagaaatatcactgacattgtaccatacactgatcaataccgtgaagaggaagaagaagaaagtgaccatgatgaaactgatgatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35870340 |
cttttgttaacaatagaaatatcactgacattgtaccatacactgatcaataccgagaagaggaagaagaagaaagtgaccatgatgaaactgattatta |
35870241 |
T |
|
| Q |
201 |
tgcaaatatttcagctaagggttgtggattatttcctacttcatgcattaagaattcactgtgtttattaaatccaatgcctgagacaaaaatggagaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35870240 |
tgcaaatatttcagctaagggttgtggattatttcctacttcatgcattaagaattcactgtgtttattaaatccaatgcctgagacaaaaatggagaac |
35870141 |
T |
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| Q |
301 |
cagattccagtgtggtcttccaatgacgttgaaaaacctaacaaaagttcttattttagcactaacagac |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35870140 |
cagattccagtgtggtcttccaatgacgttgaaaaacctaacaaaagttcttattttagcactaacagac |
35870071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35877986 - 35877902
Alignment:
| Q |
1 |
gcaaaggctatgactttacaaactcatcaacatgctccaagaaaacaatctgttctgttacatcaaccaagcaccaaattggtta |
85 |
Q |
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||||||| ||||||||| ||| | |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
35877986 |
gcaaaggatatgactttgcaaccacatcaacatgctccaagaaaacaatctgttatgttacaccaacctagcaccaaattggtta |
35877902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 24444641 - 24444272
Alignment:
| Q |
1 |
gcaaaggctatgactttacaaactcatcaacatgctccaagaaaacaatctgttctgttacatcaaccaagcaccaaattggttagtgaggaaaagaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24444641 |
gcaaaggctatgactttacaaactcatcaacatgctccaagaaaacaatctgttctgttacaacaaccaagcaccaaattggttagtgaggaaaagaact |
24444542 |
T |
|
| Q |
101 |
cttttgttaacaatagaaatatcactgacattgtaccatacactgatcaataccgtgaagaggaagaagaagaaagtgaccatgatgaaactgatgatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24444541 |
cttttgttaacaatagaaatatcactgacattgtaccatacactgatcaataccgagaagaggaagaagaagaaagtgaccatgatgaaactgattatta |
24444442 |
T |
|
| Q |
201 |
tgcaaatatttcagctaagggttgtggattatttcctacttcatgcattaagaattcactgtgtttattaaatccaatgcctgagacaaaaatggagaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24444441 |
tgcaaatatttcagctaagggttgtggattatttcctacttcatgcattaagaattcactgtgtttattaaatccaatgcctgagacaaaaatggagaac |
24444342 |
T |
|
| Q |
301 |
cagattccagtgtggtcttccaatgacgttgaaaaacctaacaaaagttcttattttagcactaacagac |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24444341 |
cagattccagtgtggtcttccaatgacgttgaaaaacctaacaaaagttcttattttagcactaacagac |
24444272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24452187 - 24452103
Alignment:
| Q |
1 |
gcaaaggctatgactttacaaactcatcaacatgctccaagaaaacaatctgttctgttacatcaaccaagcaccaaattggtta |
85 |
Q |
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||||||| ||||||||| ||| | |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
24452187 |
gcaaaggatatgactttgcaaccacatcaacatgctccaagaaaacaatctgttatgttacaccaacctagcaccaaattggtta |
24452103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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