View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15233_low_1 (Length: 668)
Name: NF15233_low_1
Description: NF15233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15233_low_1 |
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| [»] scaffold0024 (4 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 360 - 651
Target Start/End: Original strand, 30427 - 30717
Alignment:
| Q |
360 |
gaaacaatagtcactttgatagtggaaatggtttcgccttcacaaatagcgctttctaattatgtaattttttcttatcttatcatctctaattagcttc |
459 |
Q |
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| T |
30427 |
gaaacaacagtcactttcatagtggaaatgatttcaccttcacaaatagcgctttctaattatgtacttttttcttatcttatcatctctaattagcttc |
30526 |
T |
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| Q |
460 |
cattgaattacataacgccataaaggtgttagctta--gtgataagagtttaacgacaaagttctctcagggtcggctgtaaaatagtcattagtgtttt |
557 |
Q |
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| T |
30527 |
cattgaattacataatgccataa-ggtgttagcttaacgtcataacc-tcaagagataaagttctctcagggtcgattgtaaaatagtcattagtgtttt |
30624 |
T |
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| Q |
558 |
tctactaataatagttatgactagtttatgctgaaatatctatttattggtttgtggtcaggtgtcctgtggaggtactcattctgttgcatta |
651 |
Q |
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| T |
30625 |
tttactaataatagttatgactagtt-atgctgaaatatctatttattggtttgtggtcaggtgtcttgtggaggtactcattctgttgcatta |
30717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 27 - 282
Target Start/End: Original strand, 29566 - 29819
Alignment:
| Q |
27 |
tattgcagctggtggatggcactctactgcattgaccgatgaaggagaggtgctctttctgtttttctggaatctgttatgtttaaattttacttacatg |
126 |
Q |
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| T |
29566 |
tattgcagctggtggatggcactctactgcattgacagatgacggagaggtgctctttctgttttt-tggaatctattatgtttaaattttactttcaag |
29664 |
T |
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| Q |
127 |
aaatccatctagaatatttgtagcgtgtgtttgactatttttaatatcaactcaaagttatacactatcttgcgatattcatggaaacaaaaaattgaag |
226 |
Q |
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| T |
29665 |
aaatccatgaagaatatttgtagcgtgtttttgactatttttactatcatttcaaagttatacaccatcttgcgatattcatggaatcaaaaagtt-aag |
29763 |
T |
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| Q |
227 |
cgctaaattttttagtggattttttcatggttaaagatacgaatcacacgagttgt |
282 |
Q |
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| T |
29764 |
caccaaagtttttagtggattttttcatggttaaagatacgaatcaaacgagttgt |
29819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 291 - 407
Target Start/End: Original strand, 65591 - 65704
Alignment:
| Q |
291 |
tctgaaactatccctctcatgatcagttttttgaaccaatgtatgtagtagcataggtatcatggttatgaaacaatagtcactttgatagtggaaatgg |
390 |
Q |
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| T |
65591 |
tctgtaactatccctctcatgatcagttttttgaaccaatgtatgtag---cataggtatcatggttatgaaacaatagtcactttgatagtggaaatgg |
65687 |
T |
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| Q |
391 |
tttcgccttcacaaata |
407 |
Q |
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| T |
65688 |
tttcgccttcacaaata |
65704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 64995 - 65049
Alignment:
| Q |
228 |
gctaaattttttagtggattttttcatggttaaagatacgaatcacacgagttgt |
282 |
Q |
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| T |
64995 |
gctaaattttttagtggattttttcatggttaaagatacaaatcacacgagttgt |
65049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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