View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15233_low_2 (Length: 365)
Name: NF15233_low_2
Description: NF15233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15233_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 55276952 - 55276640
Alignment:
| Q |
1 |
aaagagtaattatatgatattcgtcacttagtaataagtcctctcagcttgaactacatcaaaacacgttggactaaatgtaattgtaaatcacatataa |
100 |
Q |
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| T |
55276952 |
aaagagtaattatatgatattcgtcacttagtaataagtcctctcagcttgaactacatcaaaacacgttggactaaatgtaattgtaaatcacatataa |
55276853 |
T |
|
| Q |
101 |
aatgctaaattactgatactgcatttgattgagatgaattctcaaacactaatgaactgtataaggaacaacatattttagttggtatagtagtcaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55276852 |
aatgctaaattactgatactgcatttgattgagatgaattctcaaacactaatgaactgtataaggaacaacatattttagttggtatagtagtcaccaa |
55276753 |
T |
|
| Q |
201 |
actcccgtaagtcctaagtatcgcaatcacgtgatatatcacttttgaacatatcaagttaccaagcttatagtaattagtcaattaaagaaagaactgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55276752 |
actcccgtaagtcctaagtatcgcaatcacgtgatatatcacttttgaacatatcaagttaccaagcttatagtaattagtcaattaaagaaagaactgg |
55276653 |
T |
|
| Q |
301 |
cagccaaacacac |
313 |
Q |
| |
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||||||||||||| |
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| T |
55276652 |
cagccaaacacac |
55276640 |
T |
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