View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15233_low_4 (Length: 301)
Name: NF15233_low_4
Description: NF15233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15233_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 43077507 - 43077251
Alignment:
| Q |
18 |
agtcttaattttcttgtaacaacacaaacatagaaatgaggcttgttttgttacttactttgaatgtgatgttcttagcaatgaaataaggtgaattcac |
117 |
Q |
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| T |
43077507 |
agtcttaattttcttgtaacaacacaaacatagaaatgaggcttgttttgttacttactttgaatgtgatgttcttagcaatgaaataaggtgaattcac |
43077408 |
T |
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| Q |
118 |
tgcaaaagttgcagaaccataagttcctagtgtctgtccttttgctccaggattaggagttagagcagtgtcaccccattgaacaattgttttatctgca |
217 |
Q |
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| T |
43077407 |
tgcaaaagttgccgaaccataagttcctagtgtctgtccttttgctccaggattaggagttagagcagtgtcaccccattgaacaattgttttatctgca |
43077308 |
T |
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| Q |
218 |
cctgctccttgtatggttatgaatgattttaatgcaggaatgctaactttctctctg |
274 |
Q |
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| T |
43077307 |
cctgctccttgtatggttatgaatgattttaatgcaggaatgctaactttctctctg |
43077251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 270
Target Start/End: Original strand, 33965670 - 33965867
Alignment:
| Q |
67 |
gttacttactttgaatgtgatgttcttagcaatgaaataaggtgaattcactgcaaaagttgcagaaccataagttcctagtgtctgtccttttgctcca |
166 |
Q |
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| T |
33965670 |
gttacatactttgaatgtgatgttcttggcaatgaaataaggtgaattaactgcaaaagttgctgaaccatatgttcccaatggattccctctt------ |
33965763 |
T |
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| Q |
167 |
ggattaggagttagagcagtgtcaccccattgaacaattgttttatctgcacctgctccttgtatggttatgaatgattttaatgcaggaatgctaactt |
266 |
Q |
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| T |
33965764 |
ggaccaggtgttgcagcagtgtcaccccattgaacaattgttgtatctgcaccatctccttctatggttatgaaggattttaaaggaggaatgttaactt |
33965863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 20311437 - 20311564
Alignment:
| Q |
97 |
aatgaaataaggtgaattcactgcaaaagttgcagaacca----taagttcctagtgtctgtccttttgctccaggattaggagttagagcagtgtcacc |
192 |
Q |
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| T |
20311437 |
aatgaaacaaggtgaattcactgcaaatgttgcagaaccataggtaggttcctagtg---------ttgccctagtattaggagtttgagaagtgtcacc |
20311527 |
T |
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| Q |
193 |
ccattgaacaattgttttatctgcacctgctccttgta |
230 |
Q |
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| T |
20311528 |
ccattgaac-tttagtttatctgcacctgctccttgta |
20311564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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