View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15233_low_5 (Length: 260)
Name: NF15233_low_5
Description: NF15233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15233_low_5 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 2900 - 2675
Alignment:
| Q |
16 |
atgccataagttaattaccaataaaattcattgcttcaattgacaacagttgaacttgtatccatgccgattatgcttcgaaaatcagtaaatacgccta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2900 |
atgccataagttaattaccaataaaattcattgcttcaattgacaacagttgaacttgtatccatgccgattatgcttcgaaaatcactaaatacgccta |
2801 |
T |
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| Q |
116 |
gaatgcattctaaaatatttcatttnnnnnnngaatctgttccaacaataaaatccacgccgccgcaataactagtctttttgtcttatatgcagtttaa |
215 |
Q |
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| T |
2800 |
gaatgcattctaaaatatttcatttaaaaaaagaatctgttccaacaataaaatccacgccgccgcaataactagtctttttgtcttatatgcagtttaa |
2701 |
T |
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| Q |
216 |
atcttttaatgctctaacaatataac |
241 |
Q |
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||||| |||||||||||||||||||| |
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| T |
2700 |
atcttgtaatgctctaacaatataac |
2675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 21448636 - 21448861
Alignment:
| Q |
16 |
atgccataagttaattaccaataaaattcattgcttcaattgacaacagttgaacttgtatccatgccgattatgcttcgaaaatcagtaaatacgccta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21448636 |
atgccataagttaattaccaataaaattcattgcttcaattgacaacagttgaacttgtatccatgccgattatgcttcgaaaatcactaaatacgccta |
21448735 |
T |
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| Q |
116 |
gaatgcattctaaaatatttcatttnnnnnnngaatctgttccaacaataaaatccacgccgccgcaataactagtctttttgtcttatatgcagtttaa |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21448736 |
gaatgcattctaaaatatttcatttaaaaaaagaatctgttccaacaataaaatccacgccgccgcaataactagtctttttgtcttatatgcagtttaa |
21448835 |
T |
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| Q |
216 |
atcttttaatgctctaacaatataac |
241 |
Q |
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||||| |||||||||||||||||||| |
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| T |
21448836 |
atcttgtaatgctctaacaatataac |
21448861 |
T |
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