View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15234_high_2 (Length: 345)
Name: NF15234_high_2
Description: NF15234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15234_high_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 25042396 - 25042062
Alignment:
| Q |
15 |
aaatatcaaatttcttgtaatatgttaacatataagttttatttgggaa-annnnnnnnnnnnactcttttaaaaacatagcatgctccaaaggagtggg |
113 |
Q |
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| T |
25042396 |
aaatatcaaatttcttttaatatgttaacatataagttttatttgggaacaatttttttttttactcttttaaaaacatagcatgctccaaaggagtggg |
25042297 |
T |
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| Q |
114 |
cacaagacaagcatactccaattttcatttgtctctcatgtcttgtcttgtctcttctcatttgcaagtcctagtttttcctatatatcccttttatctt |
213 |
Q |
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| T |
25042296 |
cacaagacaagcatactccaattttcatttgtctctcatgtcttgtcttgtctcttctcatttgaaagtcctagtttttcctatatatcccttttatctt |
25042197 |
T |
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| Q |
214 |
gaaaaataatcaagttccaaatatattaacttccacaatacttg---ctatatttgagcagaatcagaacttcacaagggcatggcattcaatggccatc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25042196 |
gaaaaataatcaagttccaaatatattaacttccacaatacttgtaactatatttgagcagaatcagaacttcacaagggcatggcattcaatggccatc |
25042097 |
T |
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| Q |
311 |
aatatctcctctacttcagtgtcttgaattttatc |
345 |
Q |
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| T |
25042096 |
aatatctcctctacttcagtgtcttgaattttatc |
25042062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 25020547 - 25020443
Alignment:
| Q |
86 |
aaaacatagcatgctccaaaggagtgggcacaagacaagcatactccaattttcatttgtctctcatgtcttgtcttgtctcttctcatttgcaagtcct |
185 |
Q |
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| T |
25020547 |
aaaacataacatgttccaaaggagtggacactag-----catactccaattttcaactttctctcatgtctt-----gtctcttctcatttacaagtcct |
25020458 |
T |
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| Q |
186 |
agtttttcctatatat |
201 |
Q |
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| T |
25020457 |
ag-ttttcctatatat |
25020443 |
T |
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