View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15234_high_5 (Length: 239)
Name: NF15234_high_5
Description: NF15234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15234_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2213421 - 2213646
Alignment:
| Q |
1 |
tttatttctttgtctcctatgttttcttttggtttttattgtctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgagtgaaactct |
100 |
Q |
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| T |
2213421 |
tttatttctttgtctcctatgttttcttttggtttttattgtctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgattgaaactct |
2213520 |
T |
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| Q |
101 |
gtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgcctt |
200 |
Q |
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| T |
2213521 |
gtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgcctt |
2213620 |
T |
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| Q |
201 |
gttatagtattccttttactagcttc |
226 |
Q |
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| T |
2213621 |
gttatagtattccttttactagcttc |
2213646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 2200770 - 2200932
Alignment:
| Q |
1 |
tttatttctttgtctcctatgttttcttttggtttttattgtctgtcagtagtccttgttgaatataaagggcaataagttgt-----ttcttgagtgaa |
95 |
Q |
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||||||||| ||||| || ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
2200770 |
tttatttctatgtcttctgtgttttcctttggttgttcttgtctgtcagtagtccttgttgaatataaagggcaataagttgtgttctttctggattgaa |
2200869 |
T |
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| Q |
96 |
actctgtttcatcttttgaatgtctactttctacagtgttctgcttctattatttattgctct |
158 |
Q |
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| T |
2200870 |
actctgtttcatcttttgaatgtctactttctacggtgttctgcttctatgatttattgctct |
2200932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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