View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15234_high_7 (Length: 204)
Name: NF15234_high_7
Description: NF15234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15234_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 2213220 - 2213387
Alignment:
| Q |
20 |
atttgtactcttctaacctccttttcatttacctatcctattaacccattccaacacaatacatctgtttttcaactgtccttcccttacctctcctaga |
119 |
Q |
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| T |
2213220 |
atttgtactcttctaacctccttttcatttacctatcctattaacccattccaacacaatacatctgtttttcaactgtccttcccttacctctcctaga |
2213319 |
T |
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| Q |
120 |
atacacttttaatgccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatatttg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2213320 |
atacacttttaatgccctctctccttaatacaatacattcactc----tgttgcagattatggtaatatttg |
2213387 |
T |
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Target: chr5; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 2200570 - 2200739
Alignment:
| Q |
20 |
atttgtactcttctaacctccttttcatttacctatcctattaacccattccaacacaatacatctgtttttcaactgtccttcccttacctctcctaga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||| ||||||||||||||| |
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| T |
2200570 |
atttgtactcttctaacctccttttcatttacctatcctattaactggttcctacac--tacatctgttttccaactgtccttctcttacctctcctaga |
2200667 |
T |
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| Q |
120 |
atacacttttaatgccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatatttg |
191 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
2200668 |
atatacttttaatgccctctctccttaatacaatacactcactctgtttgttgcggattatggtaatatttg |
2200739 |
T |
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