View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15234_low_2 (Length: 396)
Name: NF15234_low_2
Description: NF15234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15234_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 39490844 - 39491074
Alignment:
| Q |
20 |
tataccttcagaagtttaatttagaacaacttcgaaaaataaacagatgaattatttttctttagagggaaaacaaatgaattattattggcacaaaaca |
119 |
Q |
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| T |
39490844 |
tataccttcagaagttcaatttagaacaacttcgaaaaataaacagatgaattatttttctttagagg-aaaacaaatgaattattattgacacaaaaca |
39490942 |
T |
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| Q |
120 |
tgatggtatgcattgtatatataggataatttgttatggatgtttgagtattactctcatagttggttactttttactaatt-aatactctcattatttg |
218 |
Q |
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| T |
39490943 |
tgatggtatgcattgtatatataggataatttgttgtggatgtttgagtattactctcatagttggttactttttactaattaaatactctcattatttg |
39491042 |
T |
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| Q |
219 |
ttacattgaagcatttttctcgtaattatgat |
250 |
Q |
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| T |
39491043 |
ttacattgaaccatttttctcgtaattatgat |
39491074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 350
Target Start/End: Original strand, 39491502 - 39491580
Alignment:
| Q |
265 |
atatttttagggaaagtttttatgataattgatatgtatatcctaatcatagatctgtattcttttaggggaaaatgaatcataat |
350 |
Q |
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| T |
39491502 |
atatttttagggaaagtttttatgata-------tgtaaatcctaatcatagatctgtattcttttaggggaaaatgaatcataat |
39491580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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