View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15234_low_3 (Length: 383)
Name: NF15234_low_3
Description: NF15234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15234_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 51301021 - 51301373
Alignment:
| Q |
15 |
atcaacaaaacgtaaaataaattacatctcttaaaaaatagataaaacattcatattgcttttcatcttagcaatgctcttctcataaaagatgttatgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51301021 |
atcaacaaaacgtaaaataaattacatctcttaaaaaatagataaaacattcatattgcttttcatcttagcaatgctcttctcataaaagatgttatgc |
51301120 |
T |
|
| Q |
115 |
caataaaataaaacaa--taaaaatcagtgacataatacaaacaacttgcttacggaaaaatactacaatctttgcaatcatttctacacagtcaaaaca |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51301121 |
caataaaataaaacaaaataaaaatcagtgacataatacaaacaacttgcttatggaaaaatactacaatctttgcaatcatttctacacagtcaaaaca |
51301220 |
T |
|
| Q |
213 |
tagcagataaatataaaaggacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtaggtagtaaatat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51301221 |
tagcagataaatataaaaggacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtaggtagtaaatat |
51301320 |
T |
|
| Q |
313 |
cttttgaagctgggatcataaatcctatcaacccctaaattcaagattgcaatatct |
369 |
Q |
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| T |
51301321 |
cttttgaagctgggatcataaatcctatcaaccc----attcaacattgcaatatct |
51301373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 44112055 - 44112406
Alignment:
| Q |
15 |
atcaacaaaacgtaaaataaattacatctcttaaaaaatagataaaacattcatattgcttttcatcttagcaatgctcttctcataaaagatgttatgc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44112055 |
atcaacaaaacgtaaaataaattacatctcttaaaaaatagataaaacattcatattgcttttcagcttagcaatgctcttctcataaaagatgttatgc |
44112154 |
T |
|
| Q |
115 |
caataaaataaaacaataaaaatcagtgacataatacaaacaacttgcttacggaaaaatactacaatctttgcaatcatttctacacagtcaaaacata |
214 |
Q |
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||||||||||||| || ||| |||||| ||| ||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
44112155 |
caataaaataaaataa--aaattcagtggcatgatacaaacaacttacttatgaaaaaatactacaatttttgcaatcatttctacacagtcaaaacaca |
44112252 |
T |
|
| Q |
215 |
gcagataaatataaaaggacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtaggtagtaaatatct |
314 |
Q |
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|||||| |||| |||||||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44112253 |
acagatatatatcaaaggacggtcctttgtgcgcacatgcacaaggcaaatctgcatacgttctacattaatgccattgaggtataggtagtaaatatct |
44112352 |
T |
|
| Q |
315 |
tttgaagctgggatcataaatcctatcaacccctaaattcaagattgcaatatc |
368 |
Q |
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|
| T |
44112353 |
tttgaagctgggatcataaatcctgtcaactactaaattcaacattgcaatatc |
44112406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 50014983 - 50015349
Alignment:
| Q |
15 |
atcaacaaaacgtaaaataaattacatctcttaaaaaatagataaaacattcatattgcttttcatcttagcaatgctcttctcataaaagatgttatgc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50014983 |
atcaacaaaacgtaaaataaattacatctcttaaaaaatagataaaacattcatattgcttttcagcttagcaatgctcttctcataaaagatgttatgc |
50015082 |
T |
|
| Q |
115 |
caataaaataaaacaa------------taaaaat-cagtgacataatacaaacaacttgcttacggaaaaatactacaatctttgcaatcatttctaca |
201 |
Q |
| |
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||||||||||||| || ||||||| ||||| ||| ||||||||||||| |||| || ||||||||||||| |||||||||||||||||| |
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| T |
50015083 |
caataaaataaaataaaagaaaataaaataaaaattcagtggcatgatacaaacaacttacttatgggaaaatactacaatttttgcaatcatttctaca |
50015182 |
T |
|
| Q |
202 |
cagtcaaaacatagcagataaatataaaaggacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtag |
301 |
Q |
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||||||||||| | |||||| |||| ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50015183 |
cagtcaaaacacaacagatatatatcaaaggacagtcctttgtgcacacatgcacaaggcaaatctgcatacgttctacattaatgccattgaggtatag |
50015282 |
T |
|
| Q |
302 |
gtagtaaatatcttttgaagctgggatcataaatcctatcaacccctaaattcaagattgcaatatc |
368 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
50015283 |
gtagtaaatatcttttgaagctgggatcataaatcctgtcaactactaaattcaacattgcaatatc |
50015349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 132 - 343
Target Start/End: Original strand, 18853752 - 18853969
Alignment:
| Q |
132 |
aaaaatcagtgacataatacaaacaacttgcttacggaaaaatactacaatctttgcaatcatttctacacagtcaaaacatagcagataaatataaaag |
231 |
Q |
| |
|
|||||||||| || |||||||||||||| |||| || ||||||||||||| |||||||||| ||||||| |||||||||| | ||||||||||||||| |
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| T |
18853752 |
aaaaatcagttgcacaatacaaacaacttacttatgggaaaatactacaatttttgcaatcagttctacatagtcaaaacacaacagataaatataaaaa |
18853851 |
T |
|
| Q |
232 |
gacgatgctttgtgcacacatgcacaagacaaatctgcatacgttctacattaatgccattgaggtgtag------gtagtaaatatcttttgaagctgg |
325 |
Q |
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| T |
18853852 |
gacgatcctttctgtgcatacgcacaaggtaaatctgcacacattctacattaatgccattgaggtatagataatattagtaaatatcttttgaaggtgg |
18853951 |
T |
|
| Q |
326 |
gatcataaatcctatcaa |
343 |
Q |
| |
|
|||||||||||||||||| |
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| T |
18853952 |
gatcataaatcctatcaa |
18853969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 18853679 - 18853752
Alignment:
| Q |
15 |
atcaacaaaacgtaaaataaattacatctcttaaaaaatagataaaacattcatattgcttttcatcttagcaa |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18853679 |
atcaacaaaacgtaaaataaattacatctcttagaaaatagataaaacattcatattgcttttcatcttagcaa |
18853752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 18842661 - 18842734
Alignment:
| Q |
15 |
atcaacaaaacgtaaaataaattacatctcttaaaaaatagataaaacattcatattgcttttcatcttagcaa |
88 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18842661 |
atcaacaaagcgtaaaataaattacatctcttagaaaatagataaaacattcatattgcttttcatcttagcaa |
18842734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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