View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15235_high_2 (Length: 294)

Name: NF15235_high_2
Description: NF15235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15235_high_2
NF15235_high_2
[»] chr1 (5 HSPs)
chr1 (9-294)||(29453520-29453805)
chr1 (9-294)||(29443537-29443831)
chr1 (152-294)||(29423049-29423191)
chr1 (32-294)||(29467996-29468273)
chr1 (9-108)||(29422935-29423034)
[»] chr2 (40 HSPs)
chr2 (9-287)||(9315641-9315938)
chr2 (21-289)||(9284411-9284703)
chr2 (9-138)||(11987865-11987995)
chr2 (9-138)||(12012927-12013057)
chr2 (51-193)||(10371503-10371644)
chr2 (9-151)||(9320593-9320736)
chr2 (201-280)||(12012779-12012858)
chr2 (30-181)||(9294990-9295144)
chr2 (204-289)||(12019109-12019194)
chr2 (201-289)||(9291755-9291843)
chr2 (9-182)||(9364239-9364409)
chr2 (201-289)||(11987708-11987796)
chr2 (201-294)||(9061375-9061468)
chr2 (15-289)||(10347401-10347685)
chr2 (9-120)||(12019285-12019394)
chr2 (9-103)||(9291560-9291655)
chr2 (204-289)||(10335692-10335777)
chr2 (201-289)||(9320815-9320903)
chr2 (201-289)||(8573747-8573835)
chr2 (9-151)||(9328222-9328355)
chr2 (201-287)||(9328432-9328518)
chr2 (9-67)||(12006543-12006601)
chr2 (25-151)||(9061545-9061675)
chr2 (201-288)||(10352942-10353029)
chr2 (210-289)||(10371679-10371758)
chr2 (204-294)||(8579721-8579811)
chr2 (9-110)||(8573934-8574038)
chr2 (9-289)||(9065835-9066141)
chr2 (25-100)||(9274200-9274276)
chr2 (201-289)||(9274333-9274421)
chr2 (201-289)||(12006339-12006427)
chr2 (207-294)||(9364467-9364554)
chr2 (36-149)||(9272296-9272410)
chr2 (9-71)||(10352732-10352794)
chr2 (249-289)||(7115866-7115906)
chr2 (201-288)||(10341182-10341272)
chr2 (115-192)||(10335589-10335665)
chr2 (252-289)||(16268952-16268989)
chr2 (26-70)||(10341038-10341082)
chr2 (15-70)||(19393258-19393318)
[»] scaffold0667 (2 HSPs)
scaffold0667 (9-149)||(4067-4208)
scaffold0667 (204-289)||(4289-4371)
[»] chr3 (2 HSPs)
chr3 (9-151)||(37462092-37462236)
chr3 (216-289)||(37462313-37462389)
[»] chr8 (2 HSPs)
chr8 (201-289)||(41966929-41967017)
chr8 (9-185)||(41967066-41967242)
[»] chr4 (1 HSPs)
chr4 (16-71)||(26574525-26574580)
[»] chr7 (1 HSPs)
chr7 (202-292)||(45237760-45237850)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 29453805 - 29453520
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttgcttttaacataaagtttaactgcatatatcatatgat 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29453805 aaacttaggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttacttttaacataaagtttaactgcatatatcatatgat 29453706  T
Q  109 ggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtatgattctctttcctggggaagga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29453705 ggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtataattctctttcctggggaagga 29453606  T
Q  209 aggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29453605 aggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagat 29453520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 29443831 - 29443537
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattca-------atttg--cttttaacataaagtttaactgcatata 99  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||       |||||  ||||||||||  |||||||||  |||||    
T  29443831 aaacaaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaactagatata 29443732  T
Q  100 tcatatgatggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtatgattctctttcct 199  Q
    ||||||||||| || |||||| ||| ||||||||||||| || |||||||||| |||| |||||| ||||||||||||||||||| |||||||| |||||    
T  29443731 tcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgcttgtttgattctccttcct 29443632  T
Q  200 ggggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagat 294  Q
    |||||| |||||| | |||||||||||||||||||| || || ||||| |   ||||||||||||||||| |||||||   ||||||||||||||    
T  29443631 ggggaaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagat 29443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 152 - 294
Target Start/End: Original strand, 29423049 - 29423191
Alignment:
Q  152 gataataaataaggagtaccttctcttgcttgtatgattctctttcctggggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaa 251  Q
    |||||| |||||| |||||||||||||||||||  ||||||| ||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  29423049 gataatcaataagaagtaccttctcttgcttgtgcgattctccttcctagggaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaa 29423148  T
Q  252 ttaggaattccttcaacacaactaacttgttcactcttgagat 294  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  29423149 ttaggaattccttgaacacaactaacttgttcactcttgagat 29423191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 32 - 294
Target Start/End: Complemental strand, 29468273 - 29467996
Alignment:
Q  32 taattagagaatccttgttctataataagaattcaatttg--cttttaacataaagtttaactgcat-----atatcatatgatggatctattgaac--t 122  Q
    ||||||||||||| |||| |||||||||||||||||||||  ||||||||  | |||||||||||||     |||||||||||| | || ||| |||  |    
T  29468273 taattagagaatcattgtcctataataagaattcaatttgaccttttaac--agagtttaactgcatatatcatatcatatgataggtccatt-aactgt 29468177  T
Q  123 gaaattaacttatacagagc---------aaaaactcagataataaataaggagtaccttctcttgcttgtatgattctctttcctggggaaggaaggtg 213  Q
    || ||||||||||||| | |         ||||||||||| ||| |||||| |||||||||||||||||||  ||||||| ||||| |||||||||||||    
T  29468176 gatattaacttatacataacaaaaactcaaaaaactcagacaatcaataagaagtaccttctcttgcttgtgcgattctcgttcctagggaaggaaggtg 29468077  T
Q  214 gcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagat 294  Q
    | |||||||||||||||||||||||||||| ||  ||||||||||||||||||||| || |||| ||||||||||||||||    
T  29468076 gtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagat 29467996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 29422935 - 29423034
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg--cttttaacataaagtttaactgcatatatcatatg 106  Q
    ||||| |||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||  ||||||||  | |||||||||  ||||||||||||    
T  29422935 aaacaaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaatttgaccttttaac--agagtttaactagatatatcatatg 29423032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 9315641 - 9315938
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||| || ||||||||||| |||||||||| ||||||||||||||||||||| | |||| |||| ||||||||| | ||||||||||||    
T  9315641 aaacaaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaatttgacctttagcatagagtttaactacttatatcatatga 9315740  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttc------tcttgcttgtatgattctctttcct-- 199  Q
    ||| || |||||||||| ||||||||||||| |||||||||||| |||||| |||   |||||||||      ||||||||||||||||||| ||| |      
T  9315741 tgggtccattgaactgacattaacttatacatagcaaaaactcaaataatatata---agtaccttctcttgttcttgcttgtatgattctccttcttcc 9315837  T
Q  200 -------------ggggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcact 286  Q
                  |||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||| || |||||||||||||    
T  9315838 tacaataatcaacagggaaggaaggtggtacaagactttcaacacaaatcatagcttcatccaaattagaaattccttcaacataaataacttgttcact 9315937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 9284703 - 9284411
Alignment:
Q  21 agacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattga 119  Q
    |||| ||||||||||| |||| ||||||| | ||||||||||||||||||| | ||||| ||||||||||||| |||| || ||||||||| || ||| |    
T  9284703 agacatcaaagtaattggagactccttgtccgataataagaattcaatttgacctttaatataaagtttaactacataaattatatgatgggtccattaa 9284604  T
Q  120 actgaaattaacttatacagagcaaaaa-ctcagataataaataagga-gtaccttc------tcttgcttgtatgattctctttcctg----------- 200  Q
    ||| ||||||||||||||| |||||||| |||||||||| ||||| || ||||||||      ||||||||  | ||||||| ||| |                
T  9284603 actaaaattaacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatc 9284504  T
Q  201 ----gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
        |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| || ||||||| ||||||||    
T  9284503 aacagggaaggaaggtggcacaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactctt 9284411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 11987995 - 11987865
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| | ||||||||||||||||||| ||||||||| ||||    
T  11987995 aaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaatttgacctttaacataaagtttaactacatatatcacatga 11987896  T
Q  108 tggatctattgaactgaaattaacttataca 138  Q
    ||| || |||||| ||| |||||||||||||    
T  11987895 tgggtccattgaattgatattaacttataca 11987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 12013057 - 12012927
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||  ||| ||||| ||||||||||||||    
T  12013057 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttgacctttaacatggagtctaactacatatatcatatga 12012958  T
Q  108 tggatctattgaactgaaattaacttataca 138  Q
    ||| || |||||| ||| |||||||||||||    
T  12012957 tgggtccattgaattgatattaacttataca 12012927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 193
Target Start/End: Original strand, 10371503 - 10371644
Alignment:
Q  51 ctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaattaacttatacagagcaaaaact 149  Q
    |||| |||||||||||||||| | ||||||| | ||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| | ||||||||    
T  10371503 ctatgataagaattcaatttgacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaact 10371602  T
Q  150 cagataataaataaggagtaccttctcttgcttgtatgattctc 193  Q
    ||| ||  ||| ||  ||||||||||||||||||||||||||||    
T  10371603 cagtta--aaacaataagtaccttctcttgcttgtatgattctc 10371644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 9320593 - 9320736
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| |||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||| | | || |||| |||||||||  |||||||||||||    
T  9320593 aaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaatttgacctatagcatagagtttaacttaatatatcatatga 9320692  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactca 151  Q
    ||| || |||||| ||| || |||| ||||| ||||||||||||    
T  9320693 tgggtccattgaattgacatcaactaatacatagcaaaaactca 9320736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 12012858 - 12012779
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttg 280  Q
    |||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  12012858 gggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaaattaggaattccttcaacataactaacttg 12012779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 9295144 - 9294990
Alignment:
Q  30 agtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaatt 128  Q
    ||||||||||||| || ||| ||||||||||||||||||||| | |||| |||| ||||||||  |||| || ||||||||| || ||| |||| |||||    
T  9295144 agtaattagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccattaaactaaaatt 9295045  T
Q  129 aacttatacagagc-aaaaactcagataataaat-aaggagtaccttctcttgct 181  Q
    |||||||||| ||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  9295044 aacttatacaaagcaaaaaactcagataatcaataaagaagtaccttctcttgct 9294990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 12019194 - 12019109
Alignment:
Q  204 aaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| | ||||||    
T  12019194 aaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactctt 12019109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 9291755 - 9291843
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    |||||||||||||| | ||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||    
T  9291755 gggaaggaaggtggtagaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactctt 9291843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 9364239 - 9364409
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||| | ||||| ||| ||||||| | ||||||||||||||    
T  9364239 aaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatcatatga 9364338  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgctt 182  Q
    ||| |  ||||||| || || | |||||||| |||||| ||||||||||  || |||   |||||||||||||||    
T  9364339 tgggttcattgaacggatat-agcttatacacagcaaagactcagataaacaacaag---taccttctcttgctt 9364409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 11987796 - 11987708
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    |||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||||| ||||||||||||    
T  11987796 gggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactctt 11987708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 9061468 - 9061375
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagat 294  Q
    |||||| ||||||  || |||||||||||| ||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  9061468 gggaagaaaggtgatacgagacttccaacataaaacatagcttcatcaaaattaggaattccttcaacataactaacttgttcactcttgagat 9061375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 10347401 - 10347685
Alignment:
Q  15 aggtagagacttcaaagtaattagagaatcct-tgttctataataagaattcaatttgcttttaacataaagtttaactgcatatatcatatgatggatc 113  Q
    ||||| ||||||||||||||||||| ||| || | | |||| ||||||||||||||||        ||| ||||||||||||||||| |||||||   ||    
T  10347401 aggtaaagacttcaaagtaattagaaaatactctatcctatgataagaattcaatttg--------atagagtttaactgcatatatgatatgataagtc 10347492  T
Q  114 tattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtatgattctctttcct-------------- 199  Q
     |||||||||| || |||||||||| | ||||||||||| |||  |||||| |||||||||||||||||| ||||||||| ||| |                  
T  10347493 cattgaactgatat-aacttatacacaacaaaaactcagttaaacaataagaagtaccttctcttgcttggatgattctccttcttcctacgattatcaa 10347591  T
Q  200 -ggggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaatt---aggaattccttcaacacaactaacttgttcactctt 289  Q
      |||||||||||||| ||||||||||||||||||| ||||| || ||  | |||   |||||||||||||||| |||||| ||||||||||||    
T  10347592 cagggaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattaggaggaattccttcaacataactaatttgttcactctt 10347685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 12019394 - 12019285
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttgcttttaacataaagtttaactgcatatatcatatgat 108  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |     |||||||| ||||||||| |||||||||||||||    
T  12019394 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattccaat--acattaacatagagtttaactacatatatcatatgat 12019297  T
Q  109 ggatctattgaa 120  Q
    || || ||||||    
T  12019296 gggtccattgaa 12019285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 9291560 - 9291655
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcat 103  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | |||| |||| ||||||||| ||| ||||||    
T  9291560 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttaacctttagcatagagtttaactacatgtatcat 9291655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 10335692 - 10335777
Alignment:
Q  204 aaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    ||||||||||  |||||||||||||||||||||||||  | ||| ||||||||||||||||||||| |||||| ||||||||||||    
T  10335692 aaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgttcactctt 10335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 9320815 - 9320903
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    |||||||||||||| ||||||||||||||||||| |||| ||  || ||||| |||||||||||||||| ||||||||||| |||||||    
T  9320815 gggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactctt 9320903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 8573835 - 8573747
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    |||||| ||||||| ||||||||||||||||||| |||||||  ||   |||||||||||||||||||| |||| ||||||||||||||    
T  8573835 gggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaattccttcaacataactgacttgttcactctt 8573747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 9328222 - 9328355
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||||||||||||||||||||||        ||||  ||||||||||||||| | |||| |||| ||||||||| ||||||||||||||    
T  9328222 aaacaaaggtagagacttcaaagtaattagagaa--------ctat--taagaattcaatttgacctttagcatagagtttaacttcatatatcatatga 9328311  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactca 151  Q
     || || |||||| ||| || |||||||||| ||||||||||||    
T  9328312 cgggtccattgaattgacatcaacttatacatagcaaaaactca 9328355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 9328432 - 9328518
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactc 287  Q
    |||||||||||||| ||||||||||||||| ||| |||| | | || ||||| |||||||||||||||| ||||||||||| |||||    
T  9328432 gggaaggaaggtggtacaagacttccaacagaaaacataacatcatggaaatcaggaattccttcaacataactaacttgtgcactc 9328518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 12006601 - 12006543
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaa 67  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  12006601 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattcaa 12006543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 9061675 - 9061545
Alignment:
Q  25 ttcaaagtaattagagaatc-----cttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattg 118  Q
    ||||||||||||||||||||     ||||| |||||| |||||||||||||  | |||| |||| ||||||||| ||||||| |||||||||  | ||||    
T  9061675 ttcaaagtaattagagaatcaaatccttgtcctataacaagaattcaatttaacctttagcatagagtttaactacatatattatatgatgg--ccattg 9061578  T
Q  119 aactgaaattaacttatacagagcaaaaactca 151  Q
    |||||| || |||||||||| ||||||||||||    
T  9061577 aactgacatcaacttatacatagcaaaaactca 9061545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 10352942 - 10353029
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactct 288  Q
    |||||| ||||||| |||||||||||||||||||||||||  | ||| |||||| ||||| ||| |||| |||||||||||| |||||    
T  10352942 gggaagtaaggtggtacaagacttccaacacaaatcatagtgtcatccaaattaagaatttcttgaacataactaacttgtttactct 10353029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 10371679 - 10371758
Alignment:
Q  210 ggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    ||||| |||||||| |||||||||| |||||| | ||| ||||||| | ||||||||||| |||||||||||||||||||    
T  10371679 ggtggtacaagactaccaacacaaaccatagcatcatccaaattagaatttccttcaacataactaacttgttcactctt 10371758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 8579811 - 8579721
Alignment:
Q  204 aaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagat 294  Q
    ||||||||||| | |||  |||||||| ||||||||| || || ||||||||||||||||| ||||||| |||||| |||||| |||||||    
T  8579811 aaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttgagat 8579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 8574038 - 8573934
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttcta--taataagaattcaatttg-cttttaacataaagtttaactgcatatatcatat 105  Q
    ||||| ||||| | ||||||||||||||||||||||||||| |||  | ||||||||| |||||| | |||| |||| ||||||||  ||||||||||||    
T  8574038 aaacaaaggtataaacttcaaagtaattagagaatccttgtcctatgtgataagaatttaatttgacctttagcatagagtttaaccacatatatcatat 8573939  T
Q  106 gatgg 110  Q
    |||||    
T  8573938 gatgg 8573934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 9066141 - 9065835
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||| |||||||||||||||||||||| || | |||| |||||| ||||||||| | || | |  |||||||| || ||||||||||||||    
T  9066141 aaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaatttgaccttgagc--aaagtttagctacatatatcatatga 9066044  T
Q  108 --------tggatctattgaactgaaattaacttatacagagca-------aaaactcagataataaataaggagtaccttctcttgcttgtatgattct 192  Q
            ||| || |||||||||| |||||||| |||| ||||       |||||| ||| |||||||||| |||||||||||||| ||||  ||||||    
T  9066043 tgggtcattgggtccattgaactgatattaacttgtacaaagcaagaactcaaaacttagaaaataaataagaagtaccttctcttggttgttcgattct 9065944  T
Q  193 ctttcct------------ggggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttg 280  Q
    | |||||             |||||||||| ||| ||||||||| |||||||||||| ||  | ||   ||||||||| |||||||||| || |||||||    
T  9065943 ccttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttg 9065844  T
Q  281 ttcactctt 289  Q
    |||||||||    
T  9065843 ttcactctt 9065835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 9274200 - 9274276
Alignment:
Q  25 ttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatat 100  Q
    |||||||||||||| |||||||||| |||||||||||||||||  || | |||| |||||||||||||| |||||||    
T  9274200 ttcaaagtaattagtgaatccttgtcctataataagaattcaacatgacctttagcataaagtttaactacatatat 9274276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 9274333 - 9274421
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    |||||||| ||||| |||| ||||||||| ||||| |||| |  || ||| ||||||||||||| |||| |||||||||||||||||||    
T  9274333 gggaaggagggtggtacaaaacttccaacccaaataatagttccattgaagttaggaattcctttaacaaaactaacttgttcactctt 9274421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 12006427 - 12006339
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    |||||||||||  | ||||||||||||||||||||||| |||| ||||||||| |||||||| ||||   || |||||| |||||||||    
T  12006427 gggaaggaaggcagtacaagacttccaacacaaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactctt 12006339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 9364467 - 9364554
Alignment:
Q  207 gaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagat 294  Q
    |||||||| |||||||| ||||||||||||||||||| ||  | |||||||||||||  ||||| | |||| | ||||||||||||||    
T  9364467 gaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagat 9364554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 9272296 - 9272410
Alignment:
Q  36 tagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatgatggatctattgaactgaaattaactta 134  Q
    |||||||||||  ||||||||||||||||||||| | | |||| |||   |||||| |||| | |||||||||||| |  ||| |||||| |||||||||    
T  9272296 tagagaatcctatttctataataagaattcaattagacctttagcattgggtttaattgcaaagatcatatgatgggttcattaaactgacattaactta 9272395  T
Q  135 tacagagcaaaaact 149  Q
    |||| ||||||||||    
T  9272396 tacatagcaaaaact 9272410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 10352732 - 10352794
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg 71  Q
    ||||| ||||| |||| |||||||||||||||||||||| | |||| ||||||||||||||||    
T  10352732 aaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttg 10352794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 7115906 - 7115866
Alignment:
Q  249 aaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  7115906 aaattaggaattccttcaacacaactaacttgttcgctctt 7115866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 10341182 - 10341272
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaac---acaactaacttgttcactct 288  Q
    |||||| ||||||| || | |||||||||||| |||||||| | ||| |||| |||||||||||||||   | ||||||||||||||||||    
T  10341182 gggaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaattccttcaacataataactaacttgttcactct 10341272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 10335589 - 10335665
Alignment:
Q  115 attgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgtatgattct 192  Q
    |||||||||| || |||||||||| | |||||||||||  ||  |||||| ||||||||| |||||||||| ||||||    
T  10335589 attgaactgatat-aacttatacacaacaaaaactcagtcaaacaataagaagtaccttcccttgcttgtacgattct 10335665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 16268952 - 16268989
Alignment:
Q  252 ttaggaattccttcaacacaactaacttgttcactctt 289  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  16268952 ttaggaattccttcaacataactaactcgttcactctt 16268989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 10341038 - 10341082
Alignment:
Q  26 tcaaagtaattagagaatccttgttctataataagaattcaattt 70  Q
    |||| ||||||||||||||||| | |||| |||||||||||||||    
T  10341038 tcaaggtaattagagaatccttatcctatgataagaattcaattt 10341082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 19393318 - 19393258
Alignment:
Q  15 aggtagagacttcaaagtaattagagaatc-----cttgttctataataagaattcaattt 70  Q
    |||| |||||||||||||||||||||||||     ||| | ||||||||||||||||||||    
T  19393318 aggttgagacttcaaagtaattagagaatctaatccttttcctataataagaattcaattt 19393258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 4067 - 4208
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||  ||||| || | |||||||||  ||| |||||||||    
T  4067 aaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaatttgagttttagcacagagtttaactaaataaatcatatga 4166  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaact 149  Q
    ||| || ||||||| || ||||||||||||| ||||||||||    
T  4167 tgggtccattgaacagatattaacttatacacagcaaaaact 4208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 4289 - 4371
Alignment:
Q  204 aaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    ||||||||||| ||||||||||||||||||||| |||||  || ||||| ||||||| |||   || |||||||||||||| ||||    
T  4289 aaggaaggtggtacaagacttccaacacaaatcttagctccattgaaatcaggaatttctt---cataactaacttgttcagtctt 4371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 37462092 - 37462236
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg--cttttaacataaagtttaactgcatatatcatatg 106  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||  |||||| |||| |  |||||| |||||||||||||    
T  37462092 aaacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatg 37462191  T
Q  107 atggatctattgaactgaaattaacttatacagagcaaaaactca 151  Q
    |||| || | |||||| | |  |||||||||| | ||||||||||    
T  37462192 atgggtccaatgaactaacagaaacttatacataacaaaaactca 37462236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 37462313 - 37462389
Alignment:
Q  216 acaagacttccaacacaaatcatagc---ttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    ||||||||| ||||||||||||||||   |  ||  |||||||||| |||||||| | |||||||||||||||||||    
T  37462313 acaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaacttgttcactctt 37462389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 41967017 - 41966929
Alignment:
Q  201 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactctt 289  Q
    |||||||||||||| ||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| || ||| ||||||||||||    
T  41967017 gggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactctt 41966929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 41967242 - 41967066
Alignment:
Q  9 aaacataggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg-cttttaacataaagtttaactgcatatatcatatga 107  Q
    ||||| ||||| || |||| |||||||||||||||  || | ||||||||||||||||||||  | ||||||||| ||||||| | ||| |||  |||||    
T  41967242 aaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatgtattgtatga 41967143  T
Q  108 tggatctattgaactgaaattaacttatacagagcaaaaactcagataataaataaggagtaccttctcttgcttgta 185  Q
    ||| || |||| ||| ||  |||| |||||| ||||||| || ||||||| || ||| ||||||||||||||||||||    
T  41967142 tgggtccattgcact-aatctaacatatacaaagcaaaagctaagataatgaacaagaagtaccttctcttgcttgta 41967066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 26574525 - 26574580
Alignment:
Q  16 ggtagagacttcaaagtaattagagaatccttgttctataataagaattcaatttg 71  Q
    |||| |||| |||||||||||||||||||||| | |||| ||||||||||||||||    
T  26574525 ggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttg 26574580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 45237760 - 45237850
Alignment:
Q  202 ggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgag 292  Q
    ||||||||||||| ||||| ||| || ||||||||||  ||| ||  ||| |||||||||||  |||| || ||||||||||| |||||||    
T  45237760 ggaaggaaggtggtacaaggctttcagcacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgag 45237850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University