View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15235_low_1 (Length: 725)
Name: NF15235_low_1
Description: NF15235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15235_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 18 - 719
Target Start/End: Original strand, 25470748 - 25471448
Alignment:
| Q |
18 |
agttctattgcaccttaaggttgaagtcttttgcccatgcaaatagatttacagtacctggattgatattccatgaagcaatcgatctaccctcctgaca |
117 |
Q |
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| T |
25470748 |
agttctattgcaccttaaggttgaagtcttttgcccatgcaaatagatttacagtacctggattgatattccatgaagcaatcgatctaccctcctgaca |
25470847 |
T |
|
| Q |
118 |
tcttcaagtgatgagaatgagaatttgtagaaccccttccctaaacaaagtatttcccatttagatagatcctttcatatcggggcaaattttctcttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
25470848 |
tcttcaagtgatgagaatgagaatttgtagaaccccttccctaaacaaagtatttcccatttagatagatccttccatatcggg-caaattttctcttta |
25470946 |
T |
|
| Q |
218 |
acccaacaactgcgagacgggtacttcctttcggcaagataatacacccgtgtaaattatacatacaagcttctagcccagcttggtattcctcctctgg |
317 |
Q |
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| T |
25470947 |
acccaacaactgcgagacgggtacttcctttcggcaagataatacacccgtgtaaattatacatacaagcttctagcccagcttggtattcctcctctgg |
25471046 |
T |
|
| Q |
318 |
tattgtgatggttagcatgtcttccttcacacaatgatttttagatcttgagaattattaaaacatgatgtaaatcaattaaattatgttcatatacttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25471047 |
tattgtgatggttagcatgtcttccttcacacaatgatttttagatcttgagaattattaaaacatgatgtaaatcaattaaattatgttcatatacttt |
25471146 |
T |
|
| Q |
418 |
aattggtataggatttgtttggttaaactctctctatagtaatcaaactcccaatcttgattcggtatgaatttggatgaaaactcaattttttgtactc |
517 |
Q |
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| T |
25471147 |
aattggtataggatttgtttggttaaactctctctatagtaatcaaactcccaatcttgattcggtatgaatttggatgaaaactcaattttttgtactc |
25471246 |
T |
|
| Q |
518 |
aaactttattggtacataattcatatgataggaaataagatatattagtcgcgaatgtagtttgttgctatcattaaaacacaatacttttctatagagt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25471247 |
aaactttattggtacataattcatatgataggaaataagatatattagtcgcgaatgtagtttgttgctatcattaaaacacaatactttactatagagt |
25471346 |
T |
|
| Q |
618 |
acaaagaataaatttaatacatactttcctacatttcgaaatacttcactctatatgacactaaaagtcacatctgtatcttgcctattctcatctatta |
717 |
Q |
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||||||||||||||||| ||| ||| ||||||||| ||||||||||| || |||| |||| ||||||||||||| |||||||| |||||||||||||||| |
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| T |
25471347 |
acaaagaataaatttaacacaaactatcctacattacgaaatacttctctatatacgacattaaaagtcacatcggtatcttgactattctcatctatta |
25471446 |
T |
|
| Q |
718 |
ta |
719 |
Q |
| |
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|| |
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|
| T |
25471447 |
ta |
25471448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 607
Target Start/End: Complemental strand, 41314519 - 41314458
Alignment:
| Q |
546 |
taggaaataagatatattagtcgcgaatgtagtttgttgctatcattaaaacacaatacttt |
607 |
Q |
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| T |
41314519 |
taggaaataagatacattagacacgaatttagtttgtttttatcattaaaacactatacttt |
41314458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 604
Target Start/End: Original strand, 35709584 - 35709617
Alignment:
| Q |
571 |
aatgtagtttgttgctatcattaaaacacaatac |
604 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35709584 |
aatgtagtttgttgctatcattaaaacacaatac |
35709617 |
T |
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