View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15235_low_5 (Length: 215)
Name: NF15235_low_5
Description: NF15235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15235_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 34796541 - 34796739
Alignment:
| Q |
11 |
aagcataggtagtgttggtgctgcttcttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgtt |
110 |
Q |
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| T |
34796541 |
aagcataggtagtgttggtgctggttcttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgtt |
34796640 |
T |
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| Q |
111 |
gtttacttccctcaaggacacttggaacatcttcatgattttccgttatctttttcggataatattccttctcatgtgttctgtcgtgttgatgatgtc |
209 |
Q |
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| T |
34796641 |
gtttacttccctcaaggacacttggaacatcttcatgattttccgttatctttttcggataatattccttctcatgtgttctgtcgtgttgttgatgtc |
34796739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 22234596 - 22234680
Alignment:
| Q |
55 |
tatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaaggacacttggaaca |
139 |
Q |
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| T |
22234596 |
tatggcatgcttgtgctggtcctcttacctcacttcctaagaaaggaaatgttgtggtgtattttccacaaggtcacttggaaca |
22234680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 4274533 - 4274417
Alignment:
| Q |
38 |
ttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaaggacacttggaa |
137 |
Q |
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| T |
4274533 |
ttctgtttgtttggagctatggcatgcttgtgctggtcctttgatctctttaccaaagaaaggaagcattgttgtttatgttccacaaggacactttgaa |
4274434 |
T |
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| Q |
138 |
catcttcatgattttcc |
154 |
Q |
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| T |
4274433 |
caagctcatgattttcc |
4274417 |
T |
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