View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15236_high_1 (Length: 604)

Name: NF15236_high_1
Description: NF15236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15236_high_1
NF15236_high_1
[»] chr6 (19 HSPs)
chr6 (340-588)||(34114966-34115214)
chr6 (324-587)||(34149158-34149425)
chr6 (324-587)||(34161774-34162041)
chr6 (325-576)||(34169085-34169337)
chr6 (351-587)||(34146668-34146905)
chr6 (351-587)||(34159284-34159521)
chr6 (351-587)||(34119509-34119746)
chr6 (175-263)||(34115271-34115359)
chr6 (341-583)||(34105999-34106242)
chr6 (11-80)||(34115454-34115523)
chr6 (341-471)||(34091240-34091370)
chr6 (11-77)||(34149756-34149822)
chr6 (11-77)||(34162372-34162438)
chr6 (11-80)||(34169583-34169652)
chr6 (175-212)||(34149520-34149557)
chr6 (175-212)||(34162136-34162173)
chr6 (178-212)||(34169429-34169463)
chr6 (16-76)||(34106598-34106658)
chr6 (16-80)||(34109482-34109546)
[»] scaffold0620 (2 HSPs)
scaffold0620 (341-583)||(6489-6732)
scaffold0620 (351-583)||(4424-4659)
[»] chr1 (2 HSPs)
chr1 (339-495)||(6841136-6841292)
chr1 (339-487)||(1177605-1177753)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 340 - 588
Target Start/End: Complemental strand, 34115214 - 34114966
Alignment:
Q  340 atgagactattggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcatt 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34115214 atgagactattggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcaaatagaatctcccaagattgttgaacgcatt 34115115  T
Q  440 tgaaacgcatcaacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattctctctgtacgtacacgagg 539  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34115114 tgaaacgcatcaacgatttttccggtagacgagttagtatctctatctgtagatcttcagttaaactttcccaattcattctctctgtacgtacacgagg 34115015  T
Q  540 taagtaaaacttttaattcaaactagaattgaaaaaagatagaaagaat 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34115014 taagtaaaacttttaattcaaactagaattgaaaaaagatagaaagaat 34114966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 324 - 587
Target Start/End: Complemental strand, 34149425 - 34149158
Alignment:
Q  324 caatcagttaaattccatgagactattg---gctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcc 420  Q
    |||||||||||||| ||||| ||||||    |||||||| ||||||||| ||||||| || |||||||||||||||| ||||| ||||||||||||||||    
T  34149425 caatcagttaaatttcatgacactattattagctttaccttttttagaactgtgcagtctgcacttcttctcaaaggcaggagtttcgaatagaatctcc 34149326  T
Q  421 caagattgttgaacgcatttgaaacgcatcaacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattc 520  Q
    |||||| |||||||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  34149325 caagatcgttgaacgcatttgaaacgcatcaacgattttacagggagacgagctagtatctctatatgtagatcttcagttaaactttcccaattcattc 34149226  T
Q  521 tctctgtacgtacacgaggtaagtaaaacttttaa-ttcaaactagaattgaaaaaagatagaaagaa 587  Q
    ||||| ||||||||  |||||||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  34149225 tctctttacgtacataaggtaagttaaacttctaatttcaaactagaattgaaaaaagatagaaagaa 34149158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 324 - 587
Target Start/End: Complemental strand, 34162041 - 34161774
Alignment:
Q  324 caatcagttaaattccatgagactattg---gctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcc 420  Q
    |||||||||||||| ||||| ||||||    |||||||| ||||||||| ||||||| || |||||||||||||||| ||||| ||||||||||||||||    
T  34162041 caatcagttaaatttcatgacactattattagctttaccttttttagaactgtgcagtctgcacttcttctcaaaggcaggagtttcgaatagaatctcc 34161942  T
Q  421 caagattgttgaacgcatttgaaacgcatcaacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattc 520  Q
    |||||| |||||||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  34161941 caagatcgttgaacgcatttgaaacgcatcaacgattttacagggagacgagctagtatctctatatgtagatcttcagttaaactttcccaattcattc 34161842  T
Q  521 tctctgtacgtacacgaggtaagtaaaacttttaa-ttcaaactagaattgaaaaaagatagaaagaa 587  Q
    ||||| ||||||||  |||||||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  34161841 tctctttacgtacataaggtaagttaaacttctaatttcaaactagaattgaaaaaagatagaaagaa 34161774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 325 - 576
Target Start/End: Complemental strand, 34169337 - 34169085
Alignment:
Q  325 aatcagttaaattccatgagactattggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaag 424  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||| |||  |   ||| || |||| || ||||||||| | |||||    
T  34169337 aatcagttaaattccatgagactataggctttatcattttcagaactgtgcagcctcctcttacttagaaaagatggagttttgaatagaatgttccaag 34169238  T
Q  425 attgttgaacgcatttgaaacgcatcaacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattctctc 524  Q
    || |||||||||||||||||||||| |  |||||| |||||||||||  ||||||||| ||| |||||||||| | || |||||||||||||||| ||||    
T  34169237 atcgttgaacgcatttgaaacgcattagtgattttactggtagacgaactagtatctccatccgtagatcttcggttagactttcccaattcattttctc 34169138  T
Q  525 tgtacgtacacgaggtaagtaaaacttttaa-ttcaaactagaattgaaaaaa 576  Q
    ||||||||||| ||||||||||||| | ||| |||||||||||| ||||||||    
T  34169137 tgtacgtacacaaggtaagtaaaacatctaatttcaaactagaactgaaaaaa 34169085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 351 - 587
Target Start/End: Complemental strand, 34146905 - 34146668
Alignment:
Q  351 ggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcatttgaaacgcatc 450  Q
    ||||||||||||||  ||||| |||||| ||| ||| ||  |||||||||||| || ||||||||| | ||||||| | ||||| |||||||||||||||    
T  34146905 ggctttaccattttctgaattttgcagcatcctcttattgacaaaggaaggagttttgaatagaatgttccaagatagctgaacacatttgaaacgcatc 34146806  T
Q  451 aacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattctctctgtacgtacacgaggtaagtaaaact 550  Q
    | ||||||||  |||||||||  |||||||||||| |||||||||| |  ||||||| ||||||||||||||||||||| |||| || || | |||||||    
T  34146805 agcgattttttgggtagacgaactagtatctctatttgtagatctttatttaaacttgcccaattcattctctctgtacatacaggacgtgaataaaact 34146706  T
Q  551 tttaa-ttcaaactagaattgaaaaaagatagaaagaa 587  Q
    | ||| |||||||| |||||||||||||| ||||||||    
T  34146705 tctaagttcaaacttgaattgaaaaaagaaagaaagaa 34146668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 351 - 587
Target Start/End: Complemental strand, 34159521 - 34159284
Alignment:
Q  351 ggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcatttgaaacgcatc 450  Q
    ||||||||||||||  ||||| |||||| ||| ||| ||  |||||||||||| || ||||||||| | ||||||| | ||||| |||||||||||||||    
T  34159521 ggctttaccattttctgaattttgcagcatcctcttattgacaaaggaaggagttttgaatagaatgttccaagatagctgaacacatttgaaacgcatc 34159422  T
Q  451 aacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattctctctgtacgtacacgaggtaagtaaaact 550  Q
    | ||||||||  |||||||||  |||||||||||| |||||||||| |  ||||||| ||||||||||||||||||||| |||| || || | |||||||    
T  34159421 agcgattttttgggtagacgaactagtatctctatttgtagatctttatttaaacttgcccaattcattctctctgtacatacaggacgtgaataaaact 34159322  T
Q  551 tttaa-ttcaaactagaattgaaaaaagatagaaagaa 587  Q
    | ||| |||||||| |||||||||||||| ||||||||    
T  34159321 tctaagttcaaacttgaattgaaaaaagaaagaaagaa 34159284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 351 - 587
Target Start/End: Complemental strand, 34119746 - 34119509
Alignment:
Q  351 ggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcatttgaaacgcatc 450  Q
    |||||||||||||| |||||| |||||| ||| ||| ||  ||||||||| || || ||||||||| | |||| || | ||||| ||||||||| |||||    
T  34119746 ggctttaccattttaagaattttgcagcatcctcttattgacaaaggaagcagttttgaatagaatgttccaaaatagctgaacacatttgaaatgcatc 34119647  T
Q  451 aacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattctctctgtacgtacacgaggtaagtaaaact 550  Q
    | ||||||||  |||||||||  |||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||| |||| || || | |||||||    
T  34119646 agcgattttttgggtagacgaactagtatctctatttgtagatcttcatttaaacttgcccaattcattctctctgtacatacaggacgtgaataaaact 34119547  T
Q  551 tttaa-ttcaaactagaattgaaaaaagatagaaagaa 587  Q
    | ||| |||||||| |||||||||||||| ||||||||    
T  34119546 tctaagttcaaacttgaattgaaaaaagaaagaaagaa 34119509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 34115359 - 34115271
Alignment:
Q  175 ttgccttggattttgccaaagatctccttctggggtatttactccgtttggagtatctccaaaaaatgaatgattcatcatagcctttg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34115359 ttgccttggattttgccaaagatctccttctggggtatttactccgtttggagtatctccaaaaattgaatgattcatcatagcctttg 34115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 341 - 583
Target Start/End: Complemental strand, 34106242 - 34105999
Alignment:
Q  341 tgagactattggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcattt 440  Q
    ||||| ||| |||||||||||||| |||||| |||||| ||| ||| ||  ||||||||  || ||  |||||||| | ||||||  ||||||| | |||    
T  34106242 tgagattatgggctttaccattttgagaattatgcagcatcctcttattgacaaaggaataagttttaaatagaatgttccaagaccgttgaacactttt 34106143  T
Q  441 gaaacgcatcaacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattctctctgtacgtacacgaggt 540  Q
    |||||||||||| ||||||   |||||||||  || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||| ||||    
T  34106142 gaaacgcatcaatgattttctcggtagacgaactaatatctctatctgtagatcttcagttaaacttgcccaattcattctctctgtacatgcacaaggt 34106043  T
Q  541 aagtaaaacttttaa-ttcaaactagaattgaaaaaagatagaa 583  Q
     | |||||| | ||| || ||||| |||||||||||||| ||||    
T  34106042 gaataaaacctctaagtttaaacttgaattgaaaaaagaaagaa 34105999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 34115523 - 34115454
Alignment:
Q  11 cataggcacacttcgcattattcatgccgcttcgaatttcagcaacaacatcaacatgtgacatcttcgc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34115523 cataggcacacttcgcattattcatgccgcttcgaatttcagcaacaacatcaacatgtgacatcttcgc 34115454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 471
Target Start/End: Complemental strand, 34091370 - 34091240
Alignment:
Q  341 tgagactattggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcattt 440  Q
    ||||||| | |||||||||||| | ||||||||||| | ||| ||| ||  |||||||||||| ||| |||||||| | ||||||| ||||||| | |||    
T  34091370 tgagactgtgggctttaccattgtgagaattgtgcaacatcctcttattgacaaaggaaggagtttcaaatagaatgttccaagatcgttgaacactttt 34091271  T
Q  441 gaaacgcatcaacgatttttctggtagacga 471  Q
    | |||||||||| |||||||  |||||||||    
T  34091270 gtaacgcatcaatgattttttcggtagacga 34091240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 34149822 - 34149756
Alignment:
Q  11 cataggcacacttcgcattattcatgccgcttcgaatttcagcaacaacatcaacatgtgacatctt 77  Q
    |||| |||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  34149822 catacgcacactttgcatcattcatgcctcttcgaatttcagcaacgacatcaacatgtgacatctt 34149756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 34162438 - 34162372
Alignment:
Q  11 cataggcacacttcgcattattcatgccgcttcgaatttcagcaacaacatcaacatgtgacatctt 77  Q
    |||| |||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  34162438 catacgcacactttgcatcattcatgcctcttcgaatttcagcaacgacatcaacatgtgacatctt 34162372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 34169652 - 34169583
Alignment:
Q  11 cataggcacacttcgcattattcatgccgcttcgaatttcagcaacaacatcaacatgtgacatcttcgc 80  Q
    |||| ||||||||| |||| |||||||||||| ||||||||||||  ||| |||||||| ||||||||||    
T  34169652 catatgcacacttcacatttttcatgccgctttgaatttcagcaatgacagcaacatgtaacatcttcgc 34169583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 34149557 - 34149520
Alignment:
Q  175 ttgccttggattttgccaaagatctccttctggggtat 212  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  34149557 ttgccttggattttgccaaagatctccttttggggtat 34149520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 34162173 - 34162136
Alignment:
Q  175 ttgccttggattttgccaaagatctccttctggggtat 212  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  34162173 ttgccttggattttgccaaagatctccttttggggtat 34162136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 34169463 - 34169429
Alignment:
Q  178 ccttggattttgccaaagatctccttctggggtat 212  Q
    |||||||||||||||||||||||||| ||||||||    
T  34169463 ccttggattttgccaaagatctccttttggggtat 34169429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 34106658 - 34106598
Alignment:
Q  16 gcacacttcgcattattcatgccgcttcgaatttcagcaacaacatcaacatgtgacatct 76  Q
    ||||||||||| || ||||||||||||  ||||||||| |  |||||| ||||||||||||    
T  34106658 gcacacttcgcctttttcatgccgcttttaatttcagctaggacatcatcatgtgacatct 34106598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 34109546 - 34109482
Alignment:
Q  16 gcacacttcgcattattcatgccgcttcgaatttcagcaacaacatcaacatgtgacatcttcgc 80  Q
    ||||| ||||| || ||||||||||||  |||||||||||  |||||| |||| |||||||||||    
T  34109546 gcacagttcgcctttttcatgccgcttttaatttcagcaaggacatcatcatgcgacatcttcgc 34109482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 341 - 583
Target Start/End: Complemental strand, 6732 - 6489
Alignment:
Q  341 tgagactattggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcattt 440  Q
    ||||||| | |||||||||||| | ||||||||||| | ||| ||| ||  |||||||||||| ||| |||||||| | ||||||| ||||||| | |||    
T  6732 tgagactgtgggctttaccattgtgagaattgtgcaacatcctcttattgacaaaggaaggagtttcaaatagaatgttccaagatcgttgaacactttt 6633  T
Q  441 gaaacgcatcaacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattctctctgtacgtacacgaggt 540  Q
    | |||||||||| |||||||  |||||||||  || ||||||||||||||||||||||  ||||||| ||||||||||||||||||| | |||||  |||    
T  6632 gtaacgcatcaatgattttttcggtagacgaactaatatctctatctgtagatcttcacttaaacttgcccaattcattctctctgtgcatacacatggt 6533  T
Q  541 aagtaaaacttttaa-ttcaaactagaattgaaaaaagatagaa 583  Q
     | |||||| |  || || ||||| |||||||||||||| ||||    
T  6532 gaataaaacctccaagtttaaacttgaattgaaaaaagaaagaa 6489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 583
Target Start/End: Complemental strand, 4659 - 4424
Alignment:
Q  351 ggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcatttg--aaacgca 448  Q
    ||||||||| || | ||||||||||| | ||| ||| ||  |||||||||||| ||| |||||||| | ||||||| ||||||| | |||   |||||||    
T  4659 ggctttacccttgtgagaattgtgcaccatcctcttattgacaaaggaaggagtttcaaatagaatgttccaagatcgttgaacactttttgtaaacgca 4560  T
Q  449 tcaacgatttttctggtagacgagttagtatctctatctgtagatcttcagctaaactttcccaattcattctctctgtacgtacacgaggtaagtaaaa 548  Q
    |||| || |||   |||||||||  || |||||| |||||| ||||||||  ||||||| || |||||||||||||||| | || || |||| | |||||    
T  4559 tcaatgagtttctcggtagacgaactaatatctcgatctgtggatcttcacttaaacttgccgaattcattctctctgtgcatagacaaggtgaataaaa 4460  T
Q  549 cttttaa-ttcaaactagaattgaaaaaagatagaa 583  Q
    | |  || || ||||| |||||||||||||| ||||    
T  4459 cctcaaagtttaaacttgaattgaaaaaagaaagaa 4424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 495
Target Start/End: Original strand, 6841136 - 6841292
Alignment:
Q  339 catgagactattggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcat 438  Q
    ||||||||||| | ||||||  |||| ||||||||||||  ||||| | ||| ||||  | |||| || ||| ||||| | |||||||| || |||  ||    
T  6841136 catgagactatggcctttacggttttcagaattgtgcagtttccacctattcacaaaatatggagttttgaaaagaatgttccaagatttttcaacagat 6841235  T
Q  439 ttgaaacgcatcaacgatttttctggtagacgagttagtatctctatctgtagatct 495  Q
    |||||||||||||| |||||| | |||||| ||  ||||||||||||||||| ||||    
T  6841236 ttgaaacgcatcaatgattttaccggtagatgaaatagtatctctatctgtaaatct 6841292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 487
Target Start/End: Complemental strand, 1177753 - 1177605
Alignment:
Q  339 catgagactattggctttaccatttttagaattgtgcagcctccacttcttctcaaaggaaggagattcgaatagaatctcccaagattgttgaacgcat 438  Q
    ||||||||||| | ||||| | | ||||||||||||  |||||||| | ||| |||| || |||  || ||  ||||| | ||| |||| || ||| |||    
T  1177753 catgagactatggcctttatcgtatttagaattgtgacgcctccacctattcacaaaagagggacttttgatcagaatgttccatgatttttcaacacat 1177654  T
Q  439 ttgaaacgcatcaacgatttttctggtagacgagttagtatctctatct 487  Q
    ||||| ||||||||||||||  |||| ||| ||  ||||||||||||||    
T  1177653 ttgaatcgcatcaacgatttcactggcagatgaagtagtatctctatct 1177605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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