View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15236_high_7 (Length: 209)

Name: NF15236_high_7
Description: NF15236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15236_high_7
NF15236_high_7
[»] chr2 (12 HSPs)
chr2 (1-193)||(5163246-5163438)
chr2 (55-120)||(22878173-22878238)
chr2 (43-102)||(40944006-40944065)
chr2 (56-120)||(28251807-28251871)
chr2 (55-119)||(40776027-40776091)
chr2 (38-93)||(37419580-37419635)
chr2 (55-123)||(3673880-3673949)
chr2 (44-105)||(37276834-37276895)
chr2 (55-91)||(1830143-1830179)
chr2 (55-119)||(8017510-8017574)
chr2 (44-92)||(14277812-14277860)
chr2 (95-123)||(26143609-26143637)
[»] chr8 (13 HSPs)
chr8 (39-123)||(2487922-2488006)
chr8 (56-111)||(3953886-3953941)
chr8 (55-111)||(4560586-4560642)
chr8 (55-123)||(39551139-39551207)
chr8 (67-122)||(2482936-2482991)
chr8 (56-123)||(30191072-30191139)
chr8 (36-111)||(38602412-38602486)
chr8 (56-107)||(44236754-44236805)
chr8 (55-92)||(7008701-7008738)
chr8 (78-119)||(42215043-42215084)
chr8 (55-111)||(1664453-1664509)
chr8 (59-111)||(24326115-24326167)
chr8 (55-119)||(34770944-34771008)
[»] chr6 (7 HSPs)
chr6 (57-123)||(27857430-27857496)
chr6 (54-123)||(26559168-26559237)
chr6 (55-123)||(4308641-4308709)
chr6 (55-126)||(7351601-7351672)
chr6 (55-123)||(17241090-17241158)
chr6 (55-83)||(34404656-34404684)
chr6 (56-108)||(35070398-35070450)
[»] chr7 (10 HSPs)
chr7 (39-119)||(33894703-33894783)
chr7 (56-117)||(3836614-3836675)
chr7 (55-120)||(19624252-19624317)
chr7 (56-117)||(425754-425815)
chr7 (55-111)||(529446-529502)
chr7 (55-123)||(30535635-30535703)
chr7 (55-111)||(1418503-1418559)
chr7 (55-123)||(4970722-4970789)
chr7 (55-123)||(25670516-25670584)
chr7 (43-111)||(30751603-30751671)
[»] chr4 (11 HSPs)
chr4 (58-123)||(18628486-18628551)
chr4 (44-93)||(28259375-28259424)
chr4 (68-119)||(22471350-22471401)
chr4 (44-92)||(32071966-32072014)
chr4 (55-123)||(36577472-36577540)
chr4 (48-123)||(24087408-24087483)
chr4 (57-123)||(24091535-24091601)
chr4 (57-99)||(47970392-47970434)
chr4 (57-106)||(37636118-37636167)
chr4 (63-92)||(46053790-46053819)
chr4 (55-111)||(1017112-1017168)
[»] chr5 (12 HSPs)
chr5 (55-119)||(499661-499725)
chr5 (55-123)||(32849250-32849318)
chr5 (55-106)||(1084069-1084120)
chr5 (56-119)||(38104788-38104851)
chr5 (35-119)||(10640030-10640113)
chr5 (59-106)||(14714777-14714824)
chr5 (57-119)||(11104981-11105043)
chr5 (55-117)||(37968955-37969017)
chr5 (74-123)||(12459950-12459999)
chr5 (39-88)||(12930679-12930728)
chr5 (56-117)||(15015922-15015982)
chr5 (56-117)||(17258814-17258875)
[»] chr1 (15 HSPs)
chr1 (59-119)||(4768763-4768823)
chr1 (43-123)||(11217932-11218012)
chr1 (56-119)||(38001672-38001734)
chr1 (55-122)||(40413952-40414019)
chr1 (56-122)||(31517671-31517737)
chr1 (58-111)||(32515374-32515427)
chr1 (56-123)||(18327077-18327144)
chr1 (55-109)||(10199338-10199392)
chr1 (57-123)||(36070253-36070319)
chr1 (78-123)||(42757130-42757175)
chr1 (55-123)||(4757410-4757478)
chr1 (55-111)||(5157156-5157212)
chr1 (55-107)||(6292580-6292632)
chr1 (45-117)||(39976130-39976201)
chr1 (55-119)||(51929392-51929456)
[»] chr3 (16 HSPs)
chr3 (44-119)||(24785337-24785412)
chr3 (44-123)||(50211807-50211886)
chr3 (57-123)||(19679260-19679326)
chr3 (57-99)||(44237513-44237555)
chr3 (58-123)||(2128185-2128249)
chr3 (55-119)||(47904010-47904074)
chr3 (43-102)||(21872213-21872272)
chr3 (56-123)||(24158447-24158514)
chr3 (56-119)||(33880488-33880551)
chr3 (56-106)||(22667492-22667542)
chr3 (56-106)||(22724131-22724181)
chr3 (55-120)||(30573845-30573909)
chr3 (55-116)||(35903097-35903158)
chr3 (57-122)||(41033188-41033252)
chr3 (78-119)||(46434566-46434607)
chr3 (56-100)||(27795944-27795988)
[»] scaffold0199 (1 HSPs)
scaffold0199 (55-111)||(6894-6950)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 5163438 - 5163246
Alignment:
Q  1 ggataaaacataaagaacataagctacttcttacctatgggcatgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5163438 ggataaaacataaagaacataagctacttcttacctatgggcatgtttggaccaacttatttgagtttatcaactgacgtaagcacttgtgaagctgttt 5163339  T
Q  101 gggagaacttacgaaaacaacttgtggagccatgttcattcaacttgtgaaaacaacttcattttatcttttgctatgaaaggtacttataat 193  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||    
T  5163338 cggagaacttacgaaaacaacttgtggagccatgttcattcaacttgtgaaaacaacttcattttatcttttgctgtgaaagttgcttataat 5163246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 22878238 - 22878173
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaa 120  Q
    ||||||||||| ||||| ||||||||||||||||||||  |||||||||||| |||| | ||||||    
T  22878238 acttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaacaa 22878173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 40944065 - 40944006
Alignment:
Q  43 atgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgg 102  Q
    |||||||||  | |||||||||||||||| | ||||||||||||||||||| ||||||||    
T  40944065 atgtttggattagcttatttgagtttatctaatgacataagcacttgtgaaactgtttgg 40944006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 28251807 - 28251871
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaa 120  Q
    |||||||||||||| ||| |||||||||||| ||| | | |||||| ||||||||| ||||||||    
T  28251807 cttatttgagtttaacaaatgacataagcacgtgttatgttgtttgagagaacttatgaaaacaa 28251871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 40776027 - 40776091
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    ||||| ||||||||||| ||| |||||||||||| | || |||||||| |||||||| |||||||    
T  40776027 acttacttgagtttatctactaacataagcacttataaacctgtttggaagaacttatgaaaaca 40776091  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 37419580 - 37419635
Alignment:
Q  38 tgggcatgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaa 93  Q
    ||||||||||||||   ||||||||||||||||| ||| | |||||||||||||||    
T  37419580 tgggcatgtttggattgacttatttgagtttatctacttatataagcacttgtgaa 37419635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 3673949 - 3673880
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaag-ctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||||||||||||| |||||| |||||||| || || || |||||| |||| |||| ||||||    
T  3673949 acttatttgagtttatcaactaacataaacacttgtggagactattagggagagcttatgaaagcaactt 3673880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 37276895 - 37276834
Alignment:
Q  44 tgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggag 105  Q
    |||||||| | |||||||| |||||||| ||| | ||||||||||||||  |||||||||||    
T  37276895 tgtttggatcgacttatttaagtttatctactaatataagcacttgtgagactgtttgggag 37276834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 1830179 - 1830143
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtg 91  Q
    ||||||||||||||||  |||||||||||||||||||    
T  1830179 acttatttgagtttatttactgacataagcacttgtg 1830143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 8017574 - 8017510
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    ||||||||||| ||||| | |||||||||||||||||    | |||||||||||||| |||||||    
T  8017574 acttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaaca 8017510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 14277812 - 14277860
Alignment:
Q  44 tgtttggaccaacttatttgagtttatcaactgacataagcacttgtga 92  Q
    ||||| |||| ||||||||||||||||| || |||||||| ||||||||    
T  14277812 tgtttagaccgacttatttgagtttatctacggacataagtacttgtga 14277860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 26143609 - 26143637
Alignment:
Q  95 ctgtttgggagaacttacgaaaacaactt 123  Q
    |||||||||||||||||||||||||||||    
T  26143609 ctgtttgggagaacttacgaaaacaactt 26143637  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 2487922 - 2488006
Alignment:
Q  39 gggcatgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    |||||||||||||    |||||||||||| ||| ||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  2487922 gggcatgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaactt 2488006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 3953941 - 3953886
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||||||  |||| |||| |||||||||||||||| |||||||||||||||||    
T  3953941 cttatttgagcctatctactggcataagcacttgtgaaactgtttgggagaactta 3953886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 4560642 - 4560586
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||||||| ||||| | |||||||||||||||||| | ||||||| ||||||||    
T  4560642 acttatttgagcttatctattgacataagcacttgtgaggttgtttggaagaactta 4560586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 39551139 - 39551207
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||| ||||| || || ||||||| ||||||| ||||||||||||| ||| | |||||||||    
T  39551139 acttatttgagattatctacggatataagcatttgtgaaactgtttgggagaatttatggaaacaactt 39551207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 2482991 - 2482936
Alignment:
Q  67 ttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaact 122  Q
    ||||| || ||||||||| |||||||  ||||||||||||||||| ||||||||||    
T  2482991 ttatccacagacataagcccttgtgagactgtttgggagaacttaagaaaacaact 2482936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 30191072 - 30191139
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    |||||||||||||||| | || ||||||||||||| |  |||||||||||| |||| | |||||||||    
T  30191072 cttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaactt 30191139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 38602486 - 38602412
Alignment:
Q  36 tatgggcatgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||| ||||||||   ||||||||||| ||||| |||||||||||   |||||| ||||||||||||||||||    
T  38602486 tatgggcctgtttggattgacttatttgagcttatctactgacataag-ttttgtgaggctgtttgggagaactta 38602412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 44236754 - 44236805
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaa 107  Q
    |||||||||||||||| |||| |||||||||||||||  ||||| |||||||    
T  44236754 cttatttgagtttatctactggcataagcacttgtgagactgttcgggagaa 44236805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 7008738 - 7008701
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtga 92  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  7008738 acttatttgagtttatctactggcataagcacttgtga 7008701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 42215043 - 42215084
Alignment:
Q  78 cataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||||||||||||||  ||||||||||||||||| |||||||    
T  42215043 cataagcacttgtgacactgtttgggagaacttatgaaaaca 42215084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 1664509 - 1664453
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||||||||||||| |||  ||||| |||||||||  |||||||||||| ||||    
T  1664509 acttatttgagtttatctactagcataaacacttgtgagactgtttgggagagctta 1664453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 24326167 - 24326115
Alignment:
Q  59 atttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||| ||||| |||| |||||||||||||||  |||||||||||| ||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagctta 24326115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 34771008 - 34770944
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||||||||||||||||  ||  |||||||||||||||| ||||||| |||| | || |||||||    
T  34771008 acttatttgagtttatctgctagcataagcacttgtgaaactgtttgagagatcctatgaaaaca 34770944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 27857496 - 27857430
Alignment:
Q  57 ttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||||||| |||||||||  |||||||||| |||||||||||| |||| |||||||||||    
T  27857496 ttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaactt 27857430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 26559168 - 26559237
Alignment:
Q  54 aacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    |||||||||||||||| | |||| |||||||| ||||||  |||||||| |||||||| |||||||||||    
T  26559168 aacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttatgaaaacaactt 26559237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 4308709 - 4308641
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||||| ||  |||| |||||||||| ||||  ||||||||||||||||| |||||||||||    
T  4308709 acttatttgagttaatttactggcataagcactagtgacactgtttgggagaacttatgaaaacaactt 4308641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 7351601 - 7351672
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaacttgtg 126  Q
    ||||||||||||||||| ||||||||||||||||||||   |||||  ||||||||||  | ||||||||||    
T  7351601 acttatttgagtttatctactgacataagcacttgtgagattgtttatgagaacttacagagacaacttgtg 7351672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 17241090 - 17241158
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||||||||  |||||||||| |||||||||  ||| |||||| |||| | |||||||||||    
T  17241090 acttatttgagtttatatactgacataaacacttgtgacactgattgggaaaactaaggaaaacaactt 17241158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 34404656 - 34404684
Alignment:
Q  55 acttatttgagtttatcaactgacataag 83  Q
    |||||||||||||||||||||||||||||    
T  34404656 acttatttgagtttatcaactgacataag 34404684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 35070398 - 35070450
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaac 108  Q
    |||||||||| ||||| ||| |||||||||||||||   ||||||||||||||    
T  35070398 cttatttgagcttatctactaacataagcacttgtgggactgtttgggagaac 35070450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 33894783 - 33894703
Alignment:
Q  39 gggcatgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||||||||||||  | |||||||||| ||||||| ||||||||||||||||||  ||||||| |||| |||| |||||||    
T  33894783 gggcatgtttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaaca 33894703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 3836614 - 3836675
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaa 117  Q
    |||||||||| ||||| |||| | |||||||||||||| ||||||||||||||||| |||||    
T  3836614 cttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaa 3836675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 19624317 - 19624252
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaa 120  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||| ||||||  ||||| ||||||    
T  19624317 acttatttgagtttatctattgacataagcacttgtgaaactgttcgggagatgttacggaaacaa 19624252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 425754 - 425815
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaa 117  Q
    |||||||||| ||||| |||| ||||||||| ||||   |||||||||||||||||||||||    
T  425754 cttatttgagattatctactggcataagcacatgtggcactgtttgggagaacttacgaaaa 425815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 529502 - 529446
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||||||| ||||| |||| ||||| ||||||||| ||| ||||||||||||||    
T  529502 acttatttgagcttatctactggcataaacacttgtgaggctatttgggagaactta 529446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 30535703 - 30535635
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||||| ||  |||||||||| |||||| ||  |||||| |||||||||| |||||||||||    
T  30535703 acttatttgagttaatttactgacataaacacttgagagactgttttggagaacttatgaaaacaactt 30535635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 1418559 - 1418503
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||||||| ||||| |||| ||||||||||| ||| |||||||| |||| ||||    
T  1418559 acttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagctta 1418503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 4970722 - 4970789
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||| |||||   |||||||||  |||||||  ||||||||||||||||| |||||||||||    
T  4970722 acttatttgagcttatctcgtgacataagt-cttgtgagactgtttgggagaacttatgaaaacaactt 4970789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 25670516 - 25670584
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||| ||||| ||||| | |||||||||| |||||||  ||||||| || |||||| |||||||||||    
T  25670516 acttacttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatgaaaacaactt 25670584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 30751671 - 30751603
Alignment:
Q  43 atgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    |||||||||  ||||||||| |  ||||| |||||||||||||||||||   |||||||||||| ||||    
T  30751671 atgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagctta 30751603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 18628486 - 18628551
Alignment:
Q  58 tatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    |||||||| ||||| |||||||||| |||||||||  |||||||||||| |||| |||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaactt 18628551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 28259424 - 28259375
Alignment:
Q  44 tgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaa 93  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  28259424 tgtttggactgacttatttgagcttatcaactgacataagcacttgtgaa 28259375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 22471401 - 22471350
Alignment:
Q  68 tatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||| ||||||||||||||||||||  ||||||||||||||||| |||||||    
T  22471401 tatctactgacataagcacttgtgagactgtttgggagaacttatgaaaaca 22471350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 32072014 - 32071966
Alignment:
Q  44 tgtttggaccaacttatttgagtttatcaactgacataagcacttgtga 92  Q
    |||||||||  ||||||||||||||||| | ||||||||||||||||||    
T  32072014 tgtttggactgacttatttgagtttatctattgacataagcacttgtga 32071966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 36577472 - 36577540
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    |||||||||| ||| || | ||| ||||||||||||||  |||||| ||||||||||| ||||||||||    
T  36577472 acttatttgaatttgtctattgagataagcacttgtgagactgtttcggagaacttacaaaaacaactt 36577540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 24087483 - 24087408
Alignment:
Q  48 tggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    |||| ||| ||||||||||||||| ||| |||||| ||||||  || |||||| |||||||||| | |||||||||    
T  24087483 tggatcaatttatttgagtttatctactaacataaacacttgccaaactgttttggagaacttatggaaacaactt 24087408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 24091601 - 24091535
Alignment:
Q  57 ttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||||||| ||| |||||| ||||||  || |||||| |||||||||| | |||||||||    
T  24091601 ttatttgagtttatctactaacataaacacttgccaaactgttttggagaacttatggaaacaactt 24091535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 47970434 - 47970392
Alignment:
Q  57 ttatttgagtttatcaactgacataagcacttgtgaagctgtt 99  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||    
T  47970434 ttatttgagcttatctactgacataagcacttgtgaaactgtt 47970392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 37636118 - 37636167
Alignment:
Q  57 ttatttgagtttatcaactgacataagcacttgtgaagctgtttgggaga 106  Q
    ||||||||||||||| ||| |||||||||| ||| || ||||||||||||    
T  37636118 ttatttgagtttatctactaacataagcacctgtaaaactgtttgggaga 37636167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Complemental strand, 46053819 - 46053790
Alignment:
Q  63 gagtttatcaactgacataagcacttgtga 92  Q
    ||||||||||||||||||||||||||||||    
T  46053819 gagtttatcaactgacataagcacttgtga 46053790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 1017168 - 1017112
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||||||| | ||| |||||||||| |||||||||  |||||||| ||||||||    
T  1017168 acttatttgagctaatctactgacataaacacttgtgagactgtttggaagaactta 1017112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 499661 - 499725
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    ||||||||||| ||| | |||||||||||||| ||| | |||||||||||||||||| |||||||    
T  499661 acttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgaaaaca 499725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 32849318 - 32849250
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    |||||||| || ||||| |||  ||||||||||||||| |||||||||||||||||| ||||| |||||    
T  32849318 acttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttatgaaaaaaactt 32849250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 1084069 - 1084120
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggaga 106  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||| ||||    
T  1084069 acttatttgagtttatttactgacataagcacttgtgaaactgtttgagaga 1084120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 38104788 - 38104851
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    ||||||| || ||||||||||| ||| ||||||||||  |||||||||||||||||| ||||||    
T  38104788 cttatttaagcttatcaactgatataggcacttgtgacactgtttgggagaacttacaaaaaca 38104851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 10640113 - 10640030
Alignment:
Q  35 ctatgggcatgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||||||| ||||||||  | |||||||||||||||| |||||||||||   ||||||   |||||||||||||||| |||||||    
T  10640113 ctatgggcctgtttggattagcttatttgagtttatctactgacataag-ttttgtgatattgtttgggagaacttatgaaaaca 10640030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 14714777 - 14714824
Alignment:
Q  59 atttgagtttatcaactgacataagcacttgtgaagctgtttgggaga 106  Q
    ||||||| ||||| ||||||||||||||||||||| || |||||||||    
T  14714777 atttgagcttatccactgacataagcacttgtgaaactatttgggaga 14714824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 11105043 - 11104981
Alignment:
Q  57 ttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    ||||||||| ||||||||   |||||||||||||||  || |||||||||||||| |||||||    
T  11105043 ttatttgagcttatcaaccagcataagcacttgtgatactatttgggagaacttatgaaaaca 11104981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 37969017 - 37968955
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaa 117  Q
    |||| |||||| ||||| ||||||||||| ||||||||| ||||||| |||| |||| |||||    
T  37969017 acttgtttgagcttatctactgacataagtacttgtgaaactgtttgagagatcttatgaaaa 37968955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 12459950 - 12459999
Alignment:
Q  74 ctgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||||| |||||  |||||||||||||| || |||||||||||    
T  12459950 ctgacataagcacctgtgagactgtttgggagaacctatgaaaacaactt 12459999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 12930728 - 12930679
Alignment:
Q  39 gggcatgtttggaccaacttatttgagtttatcaactgacataagcactt 88  Q
    |||| ||||||||  | |||||||||||| ||||||||||||||||||||    
T  12930728 gggcctgtttggattagcttatttgagttcatcaactgacataagcactt 12930679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 15015982 - 15015922
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaa 117  Q
    |||||||||| ||||| ||||||||||||  ||||||  ||||||||||||||||| |||||    
T  15015982 cttatttgagcttatctactgacataagc-tttgtgagactgtttgggagaacttatgaaaa 15015922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 17258814 - 17258875
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaa 117  Q
    |||||||||| ||||||||| ||||||||||||||||   | ||||||||||| || |||||    
T  17258814 cttatttgagcttatcaactaacataagcacttgtgacattctttgggagaacctatgaaaa 17258875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 4768763 - 4768823
Alignment:
Q  59 atttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||||||||||||||||| ||||| |||||||||  | |||||||| ||||||||||||||    
T  4768763 atttgagtttatcaactggcataaacacttgtgagacagtttgggaaaacttacgaaaaca 4768823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 11217932 - 11218012
Alignment:
Q  43 atgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||| ||||||||||| | ||| |||||||| |||||||||||  | |||||||||||||   |||||||||||    
T  11217932 atgtttggaccgacttatttgagctaatctactgacatgagcacttgtgagacggtttgggagaactggtgaaaacaactt 11218012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 38001734 - 38001672
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    ||||||||||||||||||||||||||||   ||||||  ||||||||||||||||| |||||||    
T  38001734 cttatttgagtttatcaactgacataag-ttttgtgagactgtttgggagaacttatgaaaaca 38001672  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 40413952 - 40414019
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaact 122  Q
    |||||||||||||||||||| ||||| | ||||||| |   ||||||||||||||||||||| |||||    
T  40413952 acttatttgagtttatcaaccgacatcaacacttgtaagattgtttgggagaacttacgaaagcaact 40414019  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 31517671 - 31517737
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaact 122  Q
    |||||||||| ||||  |||| |||||||||||||||  |||||||||||||||||  |||||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaact 31517737  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 32515374 - 32515427
Alignment:
Q  58 tatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    |||||||||||||| ||| ||||||||||||||||  |||||||||||| ||||    
T  32515374 tatttgagtttatctactaacataagcacttgtgagactgtttgggagagctta 32515427  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 18327077 - 18327144
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    |||||||||| ||||| |||| ||||||||||| |||  || ||||| |||||||| |||||||||||    
T  18327077 cttatttgagcttatctactgtcataagcacttttgacactatttggaagaacttatgaaaacaactt 18327144  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 10199338 - 10199392
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaact 109  Q
    ||||||||||| ||||| ||| ||||||||||||||||  || ||||||||||||    
T  10199338 acttatttgagcttatctactaacataagcacttgtgacactatttgggagaact 10199392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 36070319 - 36070253
Alignment:
Q  57 ttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||  |||||  ||| |||||||||||||||  |||||| |||||||||| |||||||||||    
T  36070319 ttatttgatattatcttctggcataagcacttgtgagactgtttaggagaacttatgaaaacaactt 36070253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 42757130 - 42757175
Alignment:
Q  78 cataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||| |||||||||  |||||||| ||||||||||||||||||||    
T  42757130 cataaccacttgtgacactgtttggaagaacttacgaaaacaactt 42757175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 4757478 - 4757410
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||| ||||| | |||||||| |||||||||  |  ||||| |||||||| |||||||||||    
T  4757478 acttatttgagcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaacaactt 4757410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 5157212 - 5157156
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||||||  ||||| || ||||||| |||||||||| |||||||||||| ||||    
T  5157212 acttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagctta 5157156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 6292632 - 6292580
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaa 107  Q
    ||||||||||| ||||| |||||||||||||||| |||   ||||||||||||    
T  6292632 acttatttgagcttatctactgacataagcacttttgagattgtttgggagaa 6292580  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 39976130 - 39976201
Alignment:
Q  45 gtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaa 117  Q
    ||||||||  ||||||||||| ||||| |||||||||||   ||||||| ||||||| ||||||||| |||||    
T  39976130 gtttggactgacttatttgagattatctactgacataag-ttttgtgaaactgtttgagagaacttatgaaaa 39976201  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 51929392 - 51929456
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||| |||||| ||||| |||||||||||||| |||||  ||||||  ||||||||| |||||||    
T  51929392 acttttttgagcttatctactgacataagcacctgtgacactgtttaagagaacttatgaaaaca 51929456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 24785412 - 24785337
Alignment:
Q  44 tgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||||||| |||||||||| || ||||| | || |||||||||||||||  |||||| ||||||||||| ||||||    
T  24785412 tgtttggatcaacttattttagcttatctattgccataagcacttgtgacactgtttcggagaacttacaaaaaca 24785337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 50211886 - 50211807
Alignment:
Q  44 tgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||  ||||||||| || ||||| ||| |||||||||||||| |  ||||||| ||||||||| |||||||||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaactt 50211807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 19679260 - 19679326
Alignment:
Q  57 ttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||||||||||| |||  |||||||||||| |||  | |||| |||||||||||||||||||||    
T  19679260 ttatttgagtttatctactagcataagcacttgcgaaaatctttgagagaacttacgaaaacaactt 19679326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 44237555 - 44237513
Alignment:
Q  57 ttatttgagtttatcaactgacataagcacttgtgaagctgtt 99  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  44237555 ttatttgagtttatctactgacataagcacttgtgaaactgtt 44237513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 2128185 - 2128249
Alignment:
Q  58 tatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    |||||||| || ||||||| ||||||||||| ||| |||||||||||||||||  |||||||||||    
T  2128185 tatttgagcttttcaactggcataagcactt-tgaggctgtttgggagaacttttgaaaacaactt 2128249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 47904010 - 47904074
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||||||||||||||||  |||| |||||| | |||||  ||||||||||||||||| |||||||    
T  47904010 acttatttgagtttatcctctgatataagctcctgtgacactgtttgggagaacttatgaaaaca 47904074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 21872213 - 21872272
Alignment:
Q  43 atgtttggaccaacttatttgagtttatcaactgacataagcacttgtgaagctgtttgg 102  Q
    |||||||||  |||||||||||  ||||| ||||||||||||||||||||  ||||||||    
T  21872213 atgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttgg 21872272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 24158447 - 24158514
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaactt 123  Q
    ||||||| || ||||| ||||||||||| ||||||||| ||||||| |||| |||| | |||||||||    
T  24158447 cttatttaagcttatctactgacataagtacttgtgaaactgtttgcgagagcttatggaaacaactt 24158514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 33880488 - 33880551
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||||||||| ||||| | |||||||| || ||| ||| ||||||||||||||||| |||||||    
T  33880488 cttatttgagcttatctattgacataatcatttgagaaactgtttgggagaacttatgaaaaca 33880551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 22667542 - 22667492
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggaga 106  Q
    |||||||||| ||||| ||||||||||||||||||||  ||||||| ||||    
T  22667542 cttatttgagcttatctactgacataagcacttgtgagactgtttgagaga 22667492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 22724181 - 22724131
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgtttgggaga 106  Q
    |||||||||| ||||| ||||||||||||||||||||  ||||||| ||||    
T  22724181 cttatttgagcttatctactgacataagcacttgtgagactgtttgagaga 22724131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 30573845 - 30573909
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaa 120  Q
    ||||||||||| | ||| ||||||||||||||||||||   |||||| ||||||||| ||||||||    
T  30573845 acttatttgagct-atctactgacataagcacttgtgagtttgtttgtgagaacttatgaaaacaa 30573909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 35903097 - 35903158
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaa 116  Q
    ||||||||||||| ||||||| |||||||||||| |||  ||||||  ||||||||| ||||    
T  35903097 acttatttgagttcatcaactaacataagcacttatgacactgtttcagagaacttatgaaa 35903158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 41033188 - 41033252
Alignment:
Q  57 ttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaacttacgaaaacaact 122  Q
    ||||||||||||||| ||||||||||| ||| ||||  |||||| |||||||||| | ||||||||    
T  41033188 ttatttgagtttatctactgacataaggactcgtgagactgttt-ggagaacttaagtaaacaact 41033252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 46434566 - 46434607
Alignment:
Q  78 cataagcacttgtgaagctgtttgggagaacttacgaaaaca 119  Q
    |||||||| ||||||  |||||||||||||||||||||||||    
T  46434566 cataagcaattgtgacactgtttgggagaacttacgaaaaca 46434607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 27795944 - 27795988
Alignment:
Q  56 cttatttgagtttatcaactgacataagcacttgtgaagctgttt 100  Q
    |||||||||| ||||| |||| |||||||||||||||| ||||||    
T  27795944 cttatttgagcttatctactggcataagcacttgtgaaactgttt 27795988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 6950 - 6894
Alignment:
Q  55 acttatttgagtttatcaactgacataagcacttgtgaagctgtttgggagaactta 111  Q
    ||||||||||||||||| |||  ||||| |||||||||  |||||||||||| ||||    
T  6950 acttatttgagtttatctactagcataaacacttgtgagactgtttgggagagctta 6894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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