View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15236_low_2 (Length: 392)
Name: NF15236_low_2
Description: NF15236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15236_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 24995681 - 24995395
Alignment:
| Q |
10 |
atatgaaacatagcatttgtaacaatgtgttgcagaccttggtctcggaaaaggcactaacaaaacaaaatgggatatatcaatttaaaataattaatta |
109 |
Q |
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| T |
24995681 |
atatgaaacatagcatttgtaacaatgtgttgcagaccttggtctcggaaaaggcactaacaaaacaaaataggatatatcaatttaaaataattaatta |
24995582 |
T |
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| Q |
110 |
aataacattaaaactcaccgatcctatataaaaatcaattgttgaacttaccatggcaggatcatgctgatttccagctaaatttgctaaaattgcttga |
209 |
Q |
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| T |
24995581 |
aataacattaaaactcaccgatcctatataaaaatcaattgttgaacttaccatggcaggatcatgctgatttccagctaaatttgctaaaattgcttga |
24995482 |
T |
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| Q |
210 |
gcaatagcaggagatatttgaatcatagcatttgtaatcatttgttccagacattggccttgatcaccttggcattggaaaaggccc |
296 |
Q |
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| T |
24995481 |
gcaatagcaggagatatttgaatcatagcatttgtaatcatttgttctagacattggccttgatcaccttggcattggaaaaggccc |
24995395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 24995711 - 24995660
Alignment:
| Q |
195 |
gctaaaattgcttgagcaatagcaggagatatttgaatcatagcatttgtaa |
246 |
Q |
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| T |
24995711 |
gctaaaattgcttgtgcaatagcaggagatatatgaaacatagcatttgtaa |
24995660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 24995405 - 24995337
Alignment:
| Q |
56 |
ggaaaaggcactaacaaaacaaaatgggatatatcaatttaaaataattaattaaataacattaaaact |
124 |
Q |
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| T |
24995405 |
ggaaaaggccctaacaaaataaaaggggatatatttactcaaaataattaattaaataacatttaaact |
24995337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 24757729 - 24757790
Alignment:
| Q |
210 |
gcaatagcaggagatatttgaatcatagcatttgtaatcatttgttccagacattggccttg |
271 |
Q |
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| T |
24757729 |
gcaatagcaggagctaaatgaatcaaagcatttgtaatgatttgttgcagaccttcgccttg |
24757790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 24766726 - 24766787
Alignment:
| Q |
210 |
gcaatagcaggagatatttgaatcatagcatttgtaatcatttgttccagacattggccttg |
271 |
Q |
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| T |
24766726 |
gcaatagcaggagctaaatgaatcaaagcatttgtaatgatttgttgcagaccttcgccttg |
24766787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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