View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15237_high_12 (Length: 365)
Name: NF15237_high_12
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_high_12 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 13264793 - 13265157
Alignment:
| Q |
1 |
cattattcatcaacataatagattaacaactgtattaaaaaagacacgatgtcattggcataaatgtatacctgatggaaactttcatttttcttatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13264793 |
cattattcatcaacataatagattaacaacggtgttaaaaaagacaagatgtcattggcataaatgtatacctgatggaaactttcatttttcttatttg |
13264892 |
T |
|
| Q |
101 |
ttgtacttcatgcttgatttttcaaaaccaatggttggaaattgttttgcaaactcctcaacatcatgacgaagtttggagatctctgactgcacgtagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13264893 |
ttgtacttcatgcttgatttttcaaaaccaatggttggaaattgttttgcaaactcctcaacatcatgacgaagtttggagatctctgactgcacgtagg |
13264992 |
T |
|
| Q |
201 |
aggatgactgcaatgtttctacgaagtcctttaattttgttcctaattatgaaagttcattggtcacaacatgttagtttgcttaagcaccaagcaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
13264993 |
aggatgactgcaatgtttctacgaagtcctttaattttgttcctaattatgaaagttcattggtcacaacatgttagtttccttaagcaccaagaaacca |
13265092 |
T |
|
| Q |
301 |
catacagctaataacagcagtgtctagactagatataacaaacacaaaagaagggtataaaaaat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13265093 |
catacagctaataacagcagtgtctagactagatataacaaacacaaaacaagggtataaaaaat |
13265157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University