View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15237_high_15 (Length: 321)
Name: NF15237_high_15
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 10553974 - 10553656
Alignment:
| Q |
18 |
agttggacttaggttattggtgaaaatatctttatcaatatgtgaagaaacactatgatcaaaccttgatcaagacatctcctagttatgtaaatagacc |
117 |
Q |
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| T |
10553974 |
agttggacttaggttattggtgaaaatatctttatcaatatgtgaagaaacactatgaccaaaccttgatcaagacatctcctagttatgtaaacagacc |
10553875 |
T |
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| Q |
118 |
ataatacattctt-----nnnnnnntgaataaatataaaattataagatcttgatcatttcaagataatagagaaaatacactacataacaatatctttc |
212 |
Q |
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| T |
10553874 |
ataatacattctttaaaaaaaaaaatgaataaatataaaattataagatcttgatcatttcaagataatagagaaaatacactacataacaatatctttc |
10553775 |
T |
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| Q |
213 |
aaatcaatgaaaaaattga--------------------aatactttaccttgatttgtaggttgagatggttcttgtttctccataaacaaaggtgatg |
292 |
Q |
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| T |
10553774 |
aaatcaatgaaaaaattgaagagaatgaatgaactttgtaatactttaccttgatttgtaggttgagatggttcttgtttctccataaacaaaggtgatg |
10553675 |
T |
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| Q |
293 |
gtgaagcttctttcctttg |
311 |
Q |
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| T |
10553674 |
gtgaagcttctttcctttg |
10553656 |
T |
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