View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15237_high_2 (Length: 711)

Name: NF15237_high_2
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15237_high_2
NF15237_high_2
[»] chr1 (36 HSPs)
chr1 (19-701)||(25289853-25290540)
chr1 (245-309)||(42304220-42304284)
chr1 (356-411)||(18944623-18944678)
chr1 (245-311)||(35117778-35117845)
chr1 (239-309)||(18741964-18742034)
chr1 (237-306)||(50606487-50606556)
chr1 (237-309)||(20004095-20004167)
chr1 (237-309)||(27201730-27201802)
chr1 (360-411)||(8197023-8197074)
chr1 (360-411)||(14617018-14617069)
chr1 (360-411)||(20004219-20004270)
chr1 (360-411)||(34725223-34725274)
chr1 (237-308)||(35005207-35005278)
chr1 (356-411)||(45812658-45812713)
chr1 (360-411)||(46248080-46248131)
chr1 (360-411)||(46991784-46991835)
chr1 (361-411)||(22930195-22930245)
chr1 (237-295)||(45402191-45402249)
chr1 (237-322)||(10668295-10668380)
chr1 (366-411)||(40424722-40424767)
chr1 (237-294)||(46991900-46991957)
chr1 (356-405)||(52910204-52910252)
chr1 (237-289)||(1517316-1517368)
chr1 (248-296)||(6358216-6358264)
chr1 (361-409)||(18742089-18742137)
chr1 (245-309)||(19932766-19932830)
chr1 (241-289)||(33594140-33594188)
chr1 (356-411)||(27474261-27474316)
chr1 (360-411)||(32632683-32632734)
chr1 (360-411)||(34714603-34714654)
chr1 (356-411)||(41319929-41319984)
chr1 (360-411)||(47214491-47214542)
chr1 (237-295)||(4349733-4349791)
chr1 (373-411)||(10668200-10668238)
chr1 (361-411)||(19932880-19932930)
chr1 (237-309)||(18944726-18944799)
[»] chr6 (14 HSPs)
chr6 (237-309)||(12885971-12886043)
chr6 (360-411)||(3815204-3815255)
chr6 (237-309)||(29355860-29355932)
chr6 (360-411)||(1346921-1346972)
chr6 (360-411)||(1354882-1354933)
chr6 (356-411)||(33922951-33923006)
chr6 (358-412)||(32728281-32728335)
chr6 (376-411)||(1941812-1941847)
chr6 (360-411)||(8409200-8409251)
chr6 (360-399)||(8417441-8417480)
chr6 (356-411)||(9161080-9161135)
chr6 (356-410)||(20400625-20400679)
chr6 (237-309)||(12221919-12221992)
chr6 (361-410)||(24734591-24734640)
[»] chr3 (26 HSPs)
chr3 (237-309)||(29366725-29366797)
chr3 (237-309)||(13628795-13628867)
chr3 (237-309)||(45786219-45786291)
chr3 (360-411)||(8247816-8247867)
chr3 (360-411)||(10870078-10870129)
chr3 (231-309)||(353348-353426)
chr3 (237-311)||(13730607-13730681)
chr3 (360-411)||(7697012-7697063)
chr3 (360-411)||(13730731-13730782)
chr3 (360-411)||(16735420-16735471)
chr3 (357-408)||(25517297-25517348)
chr3 (356-411)||(39203495-39203550)
chr3 (360-411)||(46421164-46421215)
chr3 (360-411)||(52926337-52926388)
chr3 (237-299)||(516502-516564)
chr3 (245-295)||(6411835-6411885)
chr3 (361-411)||(9607182-9607232)
chr3 (237-295)||(15797314-15797372)
chr3 (356-398)||(26869699-26869741)
chr3 (237-295)||(40272817-40272875)
chr3 (373-411)||(40272952-40272990)
chr3 (237-295)||(54484785-54484843)
chr3 (237-306)||(5173724-5173793)
chr3 (237-309)||(8247691-8247764)
chr3 (237-309)||(25517175-25517245)
chr3 (271-308)||(45139515-45139552)
[»] chr4 (33 HSPs)
chr4 (356-411)||(47528651-47528706)
chr4 (237-309)||(23501847-23501919)
chr4 (360-411)||(6430752-6430803)
chr4 (356-411)||(13256520-13256575)
chr4 (360-411)||(17315425-17315476)
chr4 (360-411)||(23501750-23501801)
chr4 (248-311)||(30581481-30581543)
chr4 (356-411)||(37494808-37494863)
chr4 (360-411)||(48598950-48599001)
chr4 (237-295)||(9832318-9832376)
chr4 (360-410)||(14590795-14590845)
chr4 (361-411)||(20224941-20224991)
chr4 (237-295)||(47444029-47444087)
chr4 (366-411)||(10660361-10660406)
chr4 (366-411)||(10874506-10874551)
chr4 (360-412)||(16911518-16911570)
chr4 (237-309)||(20225134-20225206)
chr4 (237-309)||(20405147-20405219)
chr4 (237-309)||(20639663-20639734)
chr4 (356-408)||(21646924-21646976)
chr4 (237-309)||(21647024-21647096)
chr4 (245-309)||(30352593-30352657)
chr4 (237-297)||(44363135-44363195)
chr4 (360-411)||(5306790-5306841)
chr4 (360-411)||(5648216-5648267)
chr4 (360-411)||(11054273-11054324)
chr4 (373-412)||(18969697-18969736)
chr4 (360-411)||(30639337-30639388)
chr4 (237-308)||(33836492-33836563)
chr4 (237-295)||(5648330-5648388)
chr4 (237-295)||(30639451-30639509)
chr4 (237-294)||(25388249-25388306)
chr4 (237-294)||(38755913-38755970)
[»] chr8 (21 HSPs)
chr8 (243-311)||(44781515-44781583)
chr8 (238-309)||(16013514-16013585)
chr8 (237-309)||(26954193-26954265)
chr8 (360-411)||(12670375-12670426)
chr8 (360-411)||(24245408-24245459)
chr8 (360-411)||(28817753-28817804)
chr8 (360-411)||(30454222-30454273)
chr8 (360-408)||(20869623-20869671)
chr8 (237-309)||(39460999-39461071)
chr8 (360-411)||(11748256-11748307)
chr8 (238-309)||(20284075-20284146)
chr8 (238-309)||(21070703-21070774)
chr8 (360-411)||(35261636-35261687)
chr8 (360-411)||(39461123-39461174)
chr8 (245-295)||(2626594-2626644)
chr8 (239-309)||(7136534-7136604)
chr8 (373-411)||(7136669-7136707)
chr8 (360-410)||(20284200-20284250)
chr8 (360-410)||(21070829-21070879)
chr8 (237-295)||(26102589-26102647)
chr8 (272-309)||(43942384-43942421)
[»] chr2 (24 HSPs)
chr2 (237-309)||(10543758-10543830)
chr2 (361-411)||(23397723-23397773)
chr2 (360-420)||(9671128-9671189)
chr2 (237-306)||(23488544-23488613)
chr2 (237-309)||(14530378-14530450)
chr2 (360-411)||(12024045-12024096)
chr2 (360-411)||(14530275-14530326)
chr2 (360-411)||(24200752-24200803)
chr2 (373-411)||(17705452-17705490)
chr2 (354-411)||(14544020-14544077)
chr2 (237-309)||(24200628-24200700)
chr2 (360-411)||(8455443-8455494)
chr2 (360-411)||(10543655-10543706)
chr2 (360-411)||(11514393-11514444)
chr2 (360-411)||(21779386-21779437)
chr2 (360-411)||(25079845-25079896)
chr2 (361-408)||(27573581-27573628)
chr2 (249-308)||(31158456-31158515)
chr2 (368-411)||(39189556-39189599)
chr2 (237-295)||(8455321-8455379)
chr2 (237-295)||(9671251-9671309)
chr2 (237-295)||(10546235-10546293)
chr2 (244-289)||(24890489-24890534)
chr2 (237-294)||(25079722-25079779)
[»] scaffold0187 (4 HSPs)
scaffold0187 (356-411)||(8902-8957)
scaffold0187 (356-411)||(19230-19285)
scaffold0187 (360-412)||(10175-10227)
scaffold0187 (360-412)||(20503-20555)
[»] chr7 (25 HSPs)
chr7 (356-411)||(32758218-32758273)
chr7 (360-411)||(47077980-47078031)
chr7 (360-411)||(48735248-48735299)
chr7 (237-311)||(42805582-42805656)
chr7 (361-410)||(14732950-14732999)
chr7 (356-405)||(28362268-28362316)
chr7 (237-309)||(3469180-3469252)
chr7 (356-407)||(11617711-11617762)
chr7 (360-411)||(21172134-21172185)
chr7 (262-309)||(33500573-33500620)
chr7 (239-294)||(35334823-35334878)
chr7 (360-411)||(42495962-42496013)
chr7 (360-411)||(42798626-42798677)
chr7 (373-411)||(2541160-2541198)
chr7 (361-411)||(5180285-5180335)
chr7 (237-295)||(10693078-10693136)
chr7 (237-295)||(11617593-11617651)
chr7 (373-411)||(18326991-18327029)
chr7 (378-412)||(35787383-35787417)
chr7 (361-411)||(43557429-43557479)
chr7 (245-295)||(45811919-45811969)
chr7 (373-411)||(46354151-46354189)
chr7 (237-294)||(18512458-18512515)
chr7 (366-411)||(22699103-22699148)
chr7 (359-412)||(29140486-29140539)
[»] chr5 (18 HSPs)
chr5 (360-411)||(37024681-37024732)
chr5 (237-309)||(38879641-38879713)
chr5 (360-412)||(43334158-43334210)
chr5 (245-308)||(12006341-12006404)
chr5 (360-411)||(38879538-38879589)
chr5 (360-414)||(4619233-4619287)
chr5 (237-295)||(24448962-24449020)
chr5 (356-414)||(27328706-27328764)
chr5 (366-411)||(1565388-1565433)
chr5 (237-309)||(20135664-20135736)
chr5 (373-409)||(31299591-31299627)
chr5 (237-309)||(43334263-43334334)
chr5 (360-411)||(24448847-24448898)
chr5 (360-411)||(35710270-35710321)
chr5 (360-411)||(41014276-41014327)
chr5 (373-411)||(2838735-2838773)
chr5 (237-295)||(16957386-16957444)
chr5 (360-414)||(22861793-22861847)
[»] scaffold0049 (1 HSPs)
scaffold0049 (237-309)||(59037-59109)
[»] scaffold0258 (2 HSPs)
scaffold0258 (360-411)||(13150-13201)
scaffold0258 (237-294)||(13029-13086)
[»] scaffold0168 (1 HSPs)
scaffold0168 (360-411)||(30536-30587)
[»] scaffold0311 (2 HSPs)
scaffold0311 (237-295)||(10882-10940)
scaffold0311 (360-405)||(10773-10818)
[»] scaffold0057 (2 HSPs)
scaffold0057 (361-411)||(24895-24945)
scaffold0057 (237-295)||(46903-46961)
[»] scaffold0005 (1 HSPs)
scaffold0005 (360-410)||(226533-226583)
[»] scaffold0024 (1 HSPs)
scaffold0024 (360-411)||(83832-83883)


Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 701
Target Start/End: Complemental strand, 25290540 - 25289853
Alignment:
Q  19 gttaggtgtctgtttcagaatttgatgtgaaaatgtgttaaaaagtagtgctcnnnnnnn-gtttgtttgtgttaaccctcttgattctctggaaaaggt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  25290540 gttaagtgtctgtttcagaatttgatgtgaaaatgtgttaaaaagtagtgcttttttgtttgtttgtttgtgttaaccctcttgattctctggaaaaggt 25290441  T
Q  118 ccttgaatatgtcacacagacacatacatcggatatgatactgtaattcgacgcctgtaataacatgagnnnnnnnnttaattgaaagtaatcattgaat 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||        ||||||||| |||||||||||||    
T  25290440 ccttgaatatgtcacacggacacatacatcggatatgatactggaattcgacgccgataataacatgagaaaaaaaattaattgaacgtaatcattgaat 25290341  T
Q  218 gtgttagtgtcgtattagtgcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtacacgacctt 317  Q
    ||||||||||||||||||||||||||||||||    |||||||||||| |||| |||||||||||||||| ||||||||| ||||||||||||| |||||    
T  25290340 gtgttagtgtcgtattagtgcaacccagtgca----agttcctacatatgcagagtctgggaaggggtcctatcatttttggtgtattgtacacaacctt 25290245  T
Q  318 gccttaccctgnnnnnnnacataagagt---tgtttccaggacctg------tgacatttcagccacatgacaacaactttacctgttgcaccaaggtta 408  Q
    |||||||||||       ||| |||||    |||||||| ||| ||      |||| |||||| |||||||||||||||||||||||||| |||||||||    
T  25290244 gccttaccctgtttttt-acacaagaggctgtgtttccaagacttgaacacgtgacctttcagtcacatgacaacaactttacctgttgcgccaaggtta 25290146  T
Q  409 cccttcgaattagtttctgacactggcacatgaaaataaatttcttgaatgtaatcattgaatgtgttggtgtcgtattagttgctgacactgacacatg 508  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  25290145 cccttcgtattagtttctgacactggcacatgaaaataaatttcttgaatgtaatcaatgaatgtgttagtgtcgtattagttgctgacactgacacatg 25290046  T
Q  509 tcagacaccgaaacatcttctatcagaggtgtcagttatacgaaggtccttgattgtccgatgtttggccaagaaattaattgaatgtaaattacatatg 608  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25290045 tcatacacccaaacatcttctatcagaggtgtcagttatacgaaggtccttgattgtccgatgtttggctaagaaattaattgaatgtaaattacatatg 25289946  T
Q  609 ttattgcgtgctggtgtctgacactgacacatgtcgaacaccaaagatgtctttgatcagagttggccaagaggtaaataacacctgcctatg 701  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25289945 ttattgcgttctggtgtctgacactgacacatgtcgaacaccaaagatgtctttgatcagagttggccaagaggtaaataacacctgcctatg 25289853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 42304220 - 42304284
Alignment:
Q  245 gtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||||||| ||| ||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  42304220 gtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccattttttgtgtattgtac 42304284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 18944678 - 18944623
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  18944678 acctgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 18944623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 35117778 - 35117845
Alignment:
Q  245 gtgcactaaagttcctacataa-gcagggtctgggaaggggtcccatcattttttgtgtattgtacac 311  Q
    ||||||||||| |||| ||| | |||||||| |||||||||||||||||||||| |||||||||||||    
T  35117778 gtgcactaaagctcctgcattacgcagggtccgggaaggggtcccatcatttttggtgtattgtacac 35117845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 18741964 - 18742034
Alignment:
Q  239 aacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||| ||||||||||| ||   |||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  18741964 aacccggtgcactaaagctctcgcatacgcagggtctgggaaggggtcccaccatttttggtgtattgtac 18742034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 50606556 - 50606487
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattg 306  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| ||||||| ||||||||    
T  50606556 gcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccatttttggtgtattg 50606487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 20004095 - 20004167
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| || |||||||||||||||||||| |||| || |||||||||||    
T  20004095 gcaacccggtgcactaaagctcccgcatatgcggggtctgggaaggggtcccaccattattggtgtattgtac 20004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 27201802 - 27201730
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    |||||||| |||||||||| |||  |||| ||| |||| |||||||||||||| ||||||| |||||||||||    
T  27201802 gcaacccaatgcactaaagctcccgcatacgcaaggtccgggaaggggtcccaccatttttggtgtattgtac 27201730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 8197074 - 8197023
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  8197074 gtgacctttcagtcacatgacaacaacttgaccagttgcaccaaggttaccc 8197023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 14617069 - 14617018
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  14617069 gtgacctttcagtcacatgacaacaactttaccggttgcgccaaggttaccc 14617018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 20004219 - 20004270
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||||||||||||||||    
T  20004219 gtgaccttccagtcacatgacaacaactttaccagttgcaccaaggttaccc 20004270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 34725223 - 34725274
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  34725223 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 34725274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 35005278 - 35005207
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgta 308  Q
    ||||||| |||||||||||  ||  |||| |||||||| |||||||||||||| ||||||| ||||||||||    
T  35005278 gcaacccggtgcactaaagcgcccgcatacgcagggtccgggaaggggtcccaccatttttggtgtattgta 35005207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 45812658 - 45812713
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  45812658 acctgtgacctttcagtcacatgacaacaactttatcagttgcgccaaggttaccc 45812713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 46248080 - 46248131
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||| |||||||||||||||||||| ||||  ||||||||||||    
T  46248080 gtgacatttcagtcacatgacaacaactttaccagttgagccaaggttaccc 46248131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 46991835 - 46991784
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||||||||||||||||    
T  46991835 gtgaccttccagtcacatgacaacaactttaccagttgcaccaaggttaccc 46991784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 22930195 - 22930245
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  22930195 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 22930245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 45402249 - 45402191
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||  |||| ||||||||||||||||||||||| |||||    
T  45402249 gcaacccggtgcactaaagctcccgcatacgcagggtctgggaaggggtcccaccattt 45402191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 10668380 - 10668295
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtacacgaccttgcctt 322  Q
    ||||||| ||||||||||| |||  |||| |||||| | |||||||||||||| |||| || ||||||||||| | ||||| ||||    
T  10668380 gcaacccggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccaccattattggtgtattgtacgcaaccttacctt 10668295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 40424767 - 40424722
Alignment:
Q  366 tttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  40424767 tttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 40424722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 46991957 - 46991900
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcatt 294  Q
    ||||||| ||||||||||| ||| ||||| |||||||| |||||||||||||| ||||    
T  46991957 gcaacccggtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccatt 46991900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 52910252 - 52910204
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaagg 405  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  52910252 acctgtgacctttcagtcacatgacaacaactttacc-gttgcaccaagg 52910204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 1517316 - 1517368
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtccca 289  Q
    ||||||| ||||||||||| |||| |||| |||||||||| ||||||||||||    
T  1517316 gcaacccggtgcactaaagctcctgcatacgcagggtctgagaaggggtccca 1517368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 6358264 - 6358216
Alignment:
Q  248 cactaaagttcctacataagcagggtctgggaaggggtcccatcatttt 296  Q
    |||||||| |||| |||| ||||||||||||||||||||||| ||||||    
T  6358264 cactaaagatcctgcatacgcagggtctgggaaggggtcccaccatttt 6358216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 18742089 - 18742137
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttac 409  Q
    |||| |||||| |||||||||||||||||||| ||||| ||||||||||    
T  18742089 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttac 18742137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 19932766 - 19932830
Alignment:
Q  245 gtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||||| | || | |||| |||||||| |||||||||||||| ||||||| |||||||||||    
T  19932766 gtgcactaatgatcttgcatacgcagggtccgggaaggggtcccaccatttttggtgtattgtac 19932830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 33594140 - 33594188
Alignment:
Q  241 cccagtgcactaaagttcctacataagcagggtctgggaaggggtccca 289  Q
    ||||||||||||||| |||  |||| |||||||||||||||||||||||    
T  33594140 cccagtgcactaaagctcccgcatacgcagggtctgggaaggggtccca 33594188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 27474316 - 27474261
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| |||||||||||||||||||| ||||  | ||||||||||    
T  27474316 acctgtgacctttcagtcacatgacaacaactttaccagttgagctaaggttaccc 27474261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 32632683 - 32632734
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| || ||||||||||||||||| ||||| ||||||||||||    
T  32632683 gtgacctttcagtcatatgacaacaactttaccagttgcgccaaggttaccc 32632734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 34714654 - 34714603
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||  |||||||||||||||||||| ||||| ||||||||||||    
T  34714654 gtgacctttcaatcacatgacaacaactttaccagttgcgccaaggttaccc 34714603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 41319929 - 41319984
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| |||||||||||||||||||| ||||   |||||||||||    
T  41319929 acctgtgacctttcagtcacatgacaacaactttaccagttgtgtcaaggttaccc 41319984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 47214542 - 47214491
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| |||| |||||||    
T  47214542 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaagttaccc 47214491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 4349791 - 4349733
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||||    
T  4349791 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 4349733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 10668238 - 10668200
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  10668238 cacatgacaacaactttaccagttgcgccaaggttaccc 10668200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 19932880 - 19932930
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||||| |||||||||||||||||||| ||||| ||||||| ||||    
T  19932880 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggtaaccc 19932930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 18944799 - 18944726
Alignment:
Q  237 gcaacccagtgcactaaa-gttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| |||||||||| | |||  |||| |||||||| |||||||||||||| |||| || |||||||||||    
T  18944799 gcaacccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccattgttggtgtattgtac 18944726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 12886043 - 12885971
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  12886043 gcaacccggtgcactaaagctcccacatacgcagggtctgggaaggggtcccaccattttttgtgtattgtac 12885971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 3815204 - 3815255
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  3815204 gtgacatttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 3815255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 29355860 - 29355932
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||| || |||||||||||    
T  29355860 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtac 29355932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 1346972 - 1346921
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  1346972 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 1346921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 1354882 - 1354933
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  1354882 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 1354933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 33922951 - 33923006
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| || ||||||||||||||||| ||||| ||||||||||||    
T  33922951 acctgtgacttttcagtcaaatgacaacaactttaccggttgcgccaaggttaccc 33923006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 358 - 412
Target Start/End: Original strand, 32728281 - 32728335
Alignment:
Q  358 ctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccct 412  Q
    ||||||| |||||| |||||||||||||||||||  ||| |||||||||||||||    
T  32728281 ctgtgacctttcagtcacatgacaacaactttactcgttccaccaaggttaccct 32728335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 1941847 - 1941812
Alignment:
Q  376 atgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||||||||||| ||||||||||||||||||    
T  1941847 atgacaacaactttaccagttgcaccaaggttaccc 1941812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 8409251 - 8409200
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| ||||| |||||||||||||| ||||| ||||||||||||    
T  8409251 gtgacctttcagtcacattacaacaactttaccagttgcgccaaggttaccc 8409200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 8417480 - 8417441
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgca 399  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  8417480 gtgacatttcagtcacatgacaacaactttaccagttgca 8417441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 9161135 - 9161080
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| ||||||||||||||||||||  ||||  |||||||||||    
T  9161135 acctgtgacctttcagtcacatgacaacaactttaccgattgcgtcaaggttaccc 9161080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 20400679 - 20400625
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttacc 410  Q
    ||||||||| |||||| ||||||||||||||| ||||  |||| |||||||||||    
T  20400679 acctgtgacctttcagtcacatgacaacaactataccaattgcgccaaggttacc 20400625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 12221919 - 12221992
Alignment:
Q  237 gcaacccagtgcactaaa-gttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| |||||||||| | |||  |||| |||||||| |||||||||||||| |||| || |||||||||||    
T  12221919 gcaacccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtac 12221992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 24734640 - 24734591
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttacc 410  Q
    |||| |||||| |||||||||||||||||||| ||||| |||| ||||||    
T  24734640 tgacctttcagtcacatgacaacaactttaccagttgcgccaatgttacc 24734591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 29366725 - 29366797
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||||||||||||||| ||| ||||| |||||||| |||||||||||||| |||| || |||||||||||    
T  29366725 gcaacccagtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccattattggtgtattgtac 29366797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 13628795 - 13628867
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||| || |||||||||||    
T  13628795 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtac 13628867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 45786219 - 45786291
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||  |||||||| |||||||||||||| ||||||| |||||||||||    
T  45786219 gcaacccggtgcactaaagctccagcattcgcagggtccgggaaggggtcccaccatttttggtgtattgtac 45786291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 8247816 - 8247867
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  8247816 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 8247867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 10870078 - 10870129
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  10870078 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 10870129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 353348 - 353426
Alignment:
Q  231 attagtgcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||| ||||||| ||||||||||| |||  |||| || ||||| |||||||||||||| |||| || |||||||||||    
T  353348 attagggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtac 353426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 13730607 - 13730681
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtacac 311  Q
    ||||||| ||||||||||| |||  |||| || ||||| |||||||||||||| |||| || |||||||||||||    
T  13730607 gcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacac 13730681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 7697012 - 7697063
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| ||| || |||||||||||||||||||| ||||| ||||||||||||    
T  7697012 gtgaccttttagtcacatgacaacaactttaccagttgcgccaaggttaccc 7697063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 13730731 - 13730782
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  13730731 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 13730782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 16735471 - 16735420
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  16735471 gtgacgttacagtcacatgacaacaactttaccagttgcgccaaggttaccc 16735420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 25517297 - 25517348
Alignment:
Q  357 cctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggtta 408  Q
    |||||||| || ||| |||||||||||||||||||| ||||| |||||||||    
T  25517297 cctgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggtta 25517348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 39203550 - 39203495
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| |||||||||||||||||||  ||||  ||||||||||||    
T  39203550 acctgtgacctttcagtcacatgacaacaactttacaagttgtgccaaggttaccc 39203495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 46421164 - 46421215
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| ||| || |||||||||||||||||||| ||||| ||||||||||||    
T  46421164 gtgacctttaagtcacatgacaacaactttaccagttgcgccaaggttaccc 46421215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 52926337 - 52926388
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  52926337 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 52926388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 516564 - 516502
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttg 299  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||  |||||||||    
T  516564 gcaacccggtgcactaaagctcccgcatacgcagggtcggggaaggggtcccgccattttttg 516502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 6411835 - 6411885
Alignment:
Q  245 gtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||||||| |||  |||| ||| |||||||||||||||||||||||||    
T  6411835 gtgcactaaagctcccgcatacgcaaggtctgggaaggggtcccatcattt 6411885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 9607232 - 9607182
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||||| |||||||||||||||||||  ||||| ||||||||||||    
T  9607232 tgacctttcagtcacatgacaacaactttacaagttgcgccaaggttaccc 9607182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 15797372 - 15797314
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| |||||||| || ||| ||||| |||||||| |||||||||||||| |||||    
T  15797372 gcaacccggtgcactagagctcccacatatgcagggtccgggaaggggtcccaccattt 15797314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 26869741 - 26869699
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgc 398  Q
    ||||||||| |||||| |||||||||||||||||||| |||||    
T  26869741 acctgtgacctttcagtcacatgacaacaactttaccagttgc 26869699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 40272817 - 40272875
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||||    
T  40272817 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 40272875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Original strand, 40272952 - 40272990
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  40272952 cacatgacaacaactttaccagttgcgccaaggttaccc 40272990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 54484843 - 54484785
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||||    
T  54484843 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 54484785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 5173724 - 5173793
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattg 306  Q
    ||||||| ||||||||||| |||  |||| ||| |||| ||||||||| |||| ||||||| ||||||||    
T  5173724 gcaacccggtgcactaaagctcccgcatacgcaaggtccgggaaggggccccaccatttttggtgtattg 5173793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 8247691 - 8247764
Alignment:
Q  237 gcaacccagtgcact-aaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||||||||||| |||| |||  |||| |||||||| ||||||| |||||| |||| || |||||||||||    
T  8247691 gcaacccagtgcacttaaagctcccgcatacgcagggtccgggaaggagtcccaccattattggtgtattgtac 8247764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 25517175 - 25517245
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| ||||| || |||||||||||||| ||  |||||||||||||||    
T  25517175 gcaacccggtgcactaaagctccagcatacgcaggatccgggaaggggtcccacca--ttttgtgtattgtac 25517245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 45139515 - 45139552
Alignment:
Q  271 ggtctgggaaggggtcccatcattttttgtgtattgta 308  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  45139515 ggtctgggaaggggtcccaccatttttggtgtattgta 45139552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 47528651 - 47528706
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  47528651 acctgtgacctttcagtcacatgacaacaactttaccagttgcaccaaggttaccc 47528706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 23501919 - 23501847
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||| || |||||||||||    
T  23501919 gcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccattattggtgtattgtac 23501847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 6430752 - 6430803
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  6430752 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 6430803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 13256520 - 13256575
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||| || ||| |||||||||||||||||||| ||||||||||||||||||    
T  13256520 acctatgaccttccagtcacatgacaacaactttaccagttgcaccaaggttaccc 13256575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 17315425 - 17315476
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  17315425 gtgacctttcagtcacatgacaacaactttaccggttgcgccaaggttaccc 17315476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 23501801 - 23501750
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  23501801 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 23501750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 30581481 - 30581543
Alignment:
Q  248 cactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtacac 311  Q
    |||||||| ||||||||| |||||||| |||||||||||||| || |||| |||||||||||||    
T  30581481 cactaaagctcctacatatgcagggtccgggaaggggtcccacca-ttttggtgtattgtacac 30581543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 37494863 - 37494808
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| | |||| ||||||||||||| ||||||||||||||||||    
T  37494863 acctgtgacctttcagtcgcatggcaacaactttaccagttgcaccaaggttaccc 37494808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 48598950 - 48599001
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  48598950 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 48599001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 9832318 - 9832376
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| |||||||| ||||||| |||| |||||||| |||||||||||||| |||||    
T  9832318 gcaacccggtgcactagagttcctgcatatgcagggtccgggaaggggtcccaccattt 9832376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 14590845 - 14590795
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttacc 410  Q
    ||||| |||||| |||||||||||||||||||| ||||| |||||||||||    
T  14590845 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacc 14590795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 20224991 - 20224941
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  20224991 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 20224941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 47444087 - 47444029
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||||||||||| ||| |||| |||| |||||||| |||||||||||||| |||||    
T  47444087 gcaacccagtgcactgaagctcctgcatatgcagggtccgggaaggggtcccaccattt 47444029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 10660406 - 10660361
Alignment:
Q  366 tttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  10660406 tttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 10660361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 10874551 - 10874506
Alignment:
Q  366 tttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  10874551 tttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 10874506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 16911570 - 16911518
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccct 412  Q
    ||||| ||| || |||||||||||||||||||| ||||| |||||||||||||    
T  16911570 gtgacctttaagtcacatgacaacaactttaccagttgcgccaaggttaccct 16911518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 20225206 - 20225134
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| || ||||| |||||||||||||| |||| || |||||||||||    
T  20225206 gcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtac 20225134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 20405219 - 20405147
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    |||||||| |||||||||| |||  |||| || ||||| |||||||||||||| |||| || |||||||||||    
T  20405219 gcaacccaatgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattagtgtattgtac 20405147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 20639663 - 20639734
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| || |||| |||||||||||    
T  20639663 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca-ttttggtgtattgtac 20639734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 21646976 - 21646924
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggtta 408  Q
    ||||||||| || ||| |||||||||||||||||||| ||||| |||||||||    
T  21646976 acctgtgaccttccagtcacatgacaacaactttaccagttgcgccaaggtta 21646924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 21647096 - 21647024
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| || |||||||||||||||||||| |||| || || ||||||||    
T  21647096 gcaacccggtgcactaaagctcccgcatatgcggggtctgggaaggggtcccaccattattggtatattgtac 21647024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 30352593 - 30352657
Alignment:
Q  245 gtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||||||| |||  |||| |||||||| | |||||||||||| ||||||| |||||||||||    
T  30352593 gtgcactaaagctcccgcatacgcagggtccgagaaggggtcccaccatttttggtgtattgtac 30352657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 44363135 - 44363195
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttt 297  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||||||    
T  44363135 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattttt 44363195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 5306790 - 5306841
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| ||||||||| |||||||||| ||||| ||||||||||||    
T  5306790 gtgacctttcagtcacatgacatcaactttaccagttgcgccaaggttaccc 5306841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 5648267 - 5648216
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  5648267 gtgaccttacagtcacatgacaacaactttaccagttgcgccaaggttaccc 5648216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 11054273 - 11054324
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| |||| |||||||    
T  11054273 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaagttaccc 11054324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 18969736 - 18969697
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttaccct 412  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  18969736 cacatgacaacaactttaccagttgcgccaaggttaccct 18969697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 30639388 - 30639337
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||| ||||||||||||||| ||||| ||||||||||||    
T  30639388 gtgacctttcagtcacaagacaacaactttaccagttgcgccaaggttaccc 30639337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 33836492 - 33836563
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgta 308  Q
    |||||||  |||||||||| |||  |||| |||||||| |||||||||||||| |||| || ||||||||||    
T  33836492 gcaacccgttgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgta 33836563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 5648388 - 5648330
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||||||||||| ||| |||  |||| |||||||| |||||||||||||| |||||    
T  5648388 gcaacccagtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccattt 5648330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 30639509 - 30639451
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||||||||||||||| |||  |||| |||||||| ||||||||||| || |||||    
T  30639509 gcaacccagtgcactaaagctcccgcatatgcagggtccgggaaggggtctcaccattt 30639451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 25388306 - 25388249
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcatt 294  Q
    ||||||| ||||||||||| || | |||| |||||||| |||||||||||||| ||||    
T  25388306 gcaacccggtgcactaaagctcatgcatacgcagggtccgggaaggggtcccaccatt 25388249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 38755913 - 38755970
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcatt 294  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| ||||    
T  38755913 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 38755970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 44781515 - 44781583
Alignment:
Q  243 cagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtacac 311  Q
    ||||||||||||| |||  |||| ||||||||||||| ||||||||| ||||||| |||||||||||||    
T  44781515 cagtgcactaaagctcccgcatacgcagggtctgggacggggtcccaacatttttggtgtattgtacac 44781583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 16013585 - 16013514
Alignment:
Q  238 caacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    |||||| ||||||||||| |||  |||| |||||||||||||||||||| || ||||||| |||||||||||    
T  16013585 caacccggtgcactaaagctcccgcataggcagggtctgggaaggggtcgcaccatttttagtgtattgtac 16013514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 26954265 - 26954193
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||||||||||||||| |||  |||| ||  ||||||||||||||||||| |||| || |||||||||||    
T  26954265 gcaacccagtgcactaaagctcccgcatatgcgaggtctgggaaggggtcccaccattattggtgtattgtac 26954193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 12670375 - 12670426
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  12670375 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 12670426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 24245459 - 24245408
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  24245459 gtgacctttcagtcacatgacaacaactttaccagttgccccaaggttaccc 24245408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 28817753 - 28817804
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||||||||||||||||    
T  28817753 gtgaccttccagtcacatgacaacaactttaccagttgcaccaaggttaccc 28817804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 30454222 - 30454273
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  30454222 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 30454273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 20869623 - 20869671
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggtta 408  Q
    ||||| |||||| |||||||||||||||||||| ||||| |||||||||    
T  20869623 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggtta 20869671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 39460999 - 39461071
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| |||||||| ||||||||||| || |||| || |||||||||||    
T  39460999 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtctcaccattattggtgtattgtac 39461071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 11748307 - 11748256
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||| ||||||||||||| || ||| |||||||||| |||||||    
T  11748307 gtgacatttcagtcacatgacaacaatttcaccagttgcaccaaagttaccc 11748256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 20284075 - 20284146
Alignment:
Q  238 caacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    |||||| ||||||||||  |||  |||| |||||||| |||||||||||||| |||| || |||||||||||    
T  20284075 caacccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtac 20284146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 21070703 - 21070774
Alignment:
Q  238 caacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    |||||| ||||||||||  |||  |||| |||||||| |||||||||||||| |||| || |||||||||||    
T  21070703 caacccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtac 21070774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 35261687 - 35261636
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  35261687 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 35261636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 39461123 - 39461174
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| | |||||||||||||||||| ||||| ||||||||||||    
T  39461123 gtgacctttcagtctcatgacaacaactttaccagttgcgccaaggttaccc 39461174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 2626644 - 2626594
Alignment:
Q  245 gtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||| |||  |||| |||||||||||||||||||||||||||||    
T  2626644 gtgcactgaagctcccgcatatgcagggtctgggaaggggtcccatcattt 2626594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 7136534 - 7136604
Alignment:
Q  239 aacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||| ||||||||||| |||  |||| || ||||| |||||||||||||| |||| || |||||||||||    
T  7136534 aacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtac 7136604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Original strand, 7136669 - 7136707
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  7136669 cacatgacaacaactttaccagttgcgccaaggttaccc 7136707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 20284200 - 20284250
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttacc 410  Q
    ||||| |||||| |||||||||||||||||||| |||||  ||||||||||    
T  20284200 gtgacctttcagtcacatgacaacaactttacccgttgcgtcaaggttacc 20284250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 21070829 - 21070879
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttacc 410  Q
    ||||| |||||| |||||||||||||||||||| |||||  ||||||||||    
T  21070829 gtgacctttcagtcacatgacaacaactttacccgttgcgtcaaggttacc 21070879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 26102647 - 26102589
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| |||||||| || |||  ||||||||||||| |||||||||||||| |||||    
T  26102647 gcaacccggtgcactagagctcccgcataagcagggtccgggaaggggtcccaccattt 26102589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 43942421 - 43942384
Alignment:
Q  272 gtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  43942421 gtctgggaaggggtcccaccatttttggtgtattgtac 43942384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 10543830 - 10543758
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| ||||||| |||||||||||    
T  10543830 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttttggtgtattgtac 10543758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 23397773 - 23397723
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  23397773 tgacctttcagtcacatgacaacaactttaccagttgcaccaaggttaccc 23397723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 9671189 - 9671128
Alignment:
Q  360 gtgacatttc-agccacatgacaacaactttacctgttgcaccaaggttacccttcgaatta 420  Q
    |||||||||| || |||||||||||||||||||| ||||| |||||||||||| ||||||||    
T  9671189 gtgacatttccagtcacatgacaacaactttaccggttgcgccaaggttacccctcgaatta 9671128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 23488613 - 23488544
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattg 306  Q
    ||||||| ||||||||||| ||   |||| |||||||| |||||||||||||| ||||||||||||||||    
T  23488613 gcaacccggtgcactaaagctctcgcatacgcagggtccgggaaggggtcccaccattttttgtgtattg 23488544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 14530450 - 14530378
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||| || |||||||||||    
T  14530450 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtac 14530378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 12024045 - 12024096
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  12024045 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 12024096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 14530326 - 14530275
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  14530326 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 14530275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 24200752 - 24200803
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| |||||| |||||||||||    
T  24200752 gtgacttttcagtcacatgacaacaactttaccagttgcatcaaggttaccc 24200803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 17705490 - 17705452
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  17705490 cacatgacaacaactttaccagttgcaccaaggttaccc 17705452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 14544077 - 14544020
Alignment:
Q  354 ggacctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||| || |||||| ||||||||||||||||||||  |||| ||||||||||||    
T  14544077 ggacctgtaacctttcagtcacatgacaacaactttaccaattgcgccaaggttaccc 14544020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 24200628 - 24200700
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| ||  |||||  ||||||| |||||||| ||||| ||||||| |||||||||||    
T  24200628 gcaacccggtgcactaaagctctcacatactcagggtccgggaagggttcccaccatttttggtgtattgtac 24200700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 8455443 - 8455494
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  8455443 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 8455494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 10543706 - 10543655
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  10543706 gtgacctttcagtcacatgacaacaactttatcagttgcgccaaggttaccc 10543655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 11514444 - 11514393
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  11514444 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 11514393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 21779386 - 21779437
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||| ||| ||||| ||||||||||||    
T  21779386 gtgacctttcagtcacatgacaacaacttcaccagttgcgccaaggttaccc 21779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 25079845 - 25079896
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  25079845 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 25079896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 408
Target Start/End: Complemental strand, 27573628 - 27573581
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggtta 408  Q
    |||| |||||| |||||||||||||||||||| ||||| |||||||||    
T  27573628 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggtta 27573581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 31158456 - 31158515
Alignment:
Q  249 actaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgta 308  Q
    ||||||| |||  |||| ||||||||||||||||||||||| ||||||| || |||||||    
T  31158456 actaaagctcccgcatacgcagggtctgggaaggggtcccaccatttttggtttattgta 31158515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 39189556 - 39189599
Alignment:
Q  368 tcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||    
T  39189556 tcagtcacatgacaacaactttaccagttgcgccaaggttaccc 39189599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 8455321 - 8455379
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||||    
T  8455321 gcaacccggtgcactaaagctccggcatacgcagggtccgggaaggggtcccaccattt 8455379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 9671309 - 9671251
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||||    
T  9671309 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 9671251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 10546293 - 10546235
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||||    
T  10546293 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 10546235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 24890534 - 24890489
Alignment:
Q  244 agtgcactaaagttcctacataagcagggtctgggaaggggtccca 289  Q
    |||||||||||| |||| |||| |||||||| ||||||||||||||    
T  24890534 agtgcactaaagctcctgcatacgcagggtccgggaaggggtccca 24890489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 25079722 - 25079779
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcatt 294  Q
    ||||||| ||||||||||| || | |||| |||||||| |||||||||||||| ||||    
T  25079722 gcaacccggtgcactaaagctcttgcatacgcagggtccgggaaggggtcccaccatt 25079779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 8957 - 8902
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||    
T  8957 acctgtgacatttcagtcacatgacaacaacttcaccggttgcgccaaggttaccc 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 19285 - 19230
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||    
T  19285 acctgtgacatttcagtcacatgacaacaacttcaccggttgcgccaaggttaccc 19230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 10175 - 10227
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccct 412  Q
    ||||| |||||| |||||||||||||||||||| |||||  ||||||||||||    
T  10175 gtgacctttcagtcacatgacaacaactttaccagttgcgtcaaggttaccct 10227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 20503 - 20555
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccct 412  Q
    ||||| |||||| |||||||||||||||||||| |||||  ||||||||||||    
T  20503 gtgacctttcagtcacatgacaacaactttaccagttgcgtcaaggttaccct 20555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 32758273 - 32758218
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  32758273 acctgtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 32758218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 47077980 - 47078031
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  47077980 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 47078031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 48735248 - 48735299
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  48735248 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 48735299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 42805656 - 42805582
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtacac 311  Q
    ||||||| ||||||||||| |||  |||| || ||||| |||||||||||||| |||| || |||||||||||||    
T  42805656 gcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacac 42805582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 14732950 - 14732999
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttacc 410  Q
    |||| |||||| |||||||||||||||||||| ||||| |||||||||||    
T  14732950 tgacttttcagtcacatgacaacaactttaccagttgcgccaaggttacc 14732999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 28362268 - 28362316
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaagg 405  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  28362268 acctgtgacctttcagccacatgacaacaactttacc-gttgcgccaagg 28362316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 3469180 - 3469252
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||||| ||||||||| |||  ||||  |||||||| ||||||||||||  ||||||| |||||||||||    
T  3469180 gcaacccagcgcactaaagctcccgcatacacagggtctaggaaggggtcccgccatttttggtgtattgtac 3469252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 11617711 - 11617762
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggtt 407  Q
    ||||||||| |||||| |||||||||||||||||||| ||||| || |||||    
T  11617711 acctgtgacctttcagtcacatgacaacaactttaccagttgcgccgaggtt 11617762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 21172134 - 21172185
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| ||||||  ||||||||||||||||||| ||||| ||||||||||||    
T  21172134 gtgacctttcagttacatgacaacaactttaccagttgcgccaaggttaccc 21172185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 33500620 - 33500573
Alignment:
Q  262 cataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    |||| |||||||| |||||||||||||| |||||||||||||| ||||    
T  33500620 catacgcagggtccgggaaggggtcccaccattttttgtgtatagtac 33500573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 35334823 - 35334878
Alignment:
Q  239 aacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcatt 294  Q
    ||||| ||||||||||| |||| |||| |||||||| |||||||||||||| ||||    
T  35334823 aacccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccaccatt 35334878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 42495962 - 42496013
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| || ||||||||||||||||| ||||| ||||||||||||    
T  42495962 gtgacctttcagtcatatgacaacaactttaccagttgcgccaaggttaccc 42496013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 42798677 - 42798626
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  42798677 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 42798626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Original strand, 2541160 - 2541198
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  2541160 cacatgacaacaactttaccagttgcgccaaggttaccc 2541198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 5180285 - 5180335
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||||| |||||||||||||||||||| |||||  |||||||||||    
T  5180285 tgacctttcagtcacatgacaacaactttaccagttgcgtcaaggttaccc 5180335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 10693078 - 10693136
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    |||||||||||||||| || |||  |||| |||||||| |||||||||||||| |||||    
T  10693078 gcaacccagtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccattt 10693136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 11617593 - 11617651
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||| |||| ||||||||  ||||||||||||| |||||    
T  11617593 gcaacccggtgcactaaaggtcctgcatacgcagggtccaggaaggggtcccaccattt 11617651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 18327029 - 18326991
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  18327029 cacatgacaacaactttaccagttgcgccaaggttaccc 18326991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 412
Target Start/End: Original strand, 35787383 - 35787417
Alignment:
Q  378 gacaacaactttacctgttgcaccaaggttaccct 412  Q
    ||||||||||||||| |||||||||||||||||||    
T  35787383 gacaacaactttaccggttgcaccaaggttaccct 35787417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 43557479 - 43557429
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||||| |||||||||||||||||||| |||||  |||||||||||    
T  43557479 tgacctttcagtcacatgacaacaactttaccagttgcggcaaggttaccc 43557429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 45811969 - 45811919
Alignment:
Q  245 gtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||||||| |||| |||||||||||||||| ||||| ||||| |||||    
T  45811969 gtgcactaaagctcctgcataagcagggtctggaaagggatcccaccattt 45811919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 46354189 - 46354151
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  46354189 cacatgacaacaactttaccagttgcgccaaggttaccc 46354151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 18512458 - 18512515
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcatt 294  Q
    |||||||||||||| |||| |||  |||| |||||||| |||||||||||||| ||||    
T  18512458 gcaacccagtgcaccaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 18512515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 22699103 - 22699148
Alignment:
Q  366 tttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||| |||||||||||||||||||| |||||  |||||||||||    
T  22699103 tttcagtcacatgacaacaactttaccagttgcgtcaaggttaccc 22699148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 29140486 - 29140539
Alignment:
Q  359 tgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccct 412  Q
    |||||| ||||||  ||||||||||||||||||| ||||| ||||| |||||||    
T  29140486 tgtgacctttcagttacatgacaacaactttaccagttgcgccaagattaccct 29140539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 37024681 - 37024732
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  37024681 gtgacctttcagtcacatgacaacaactttaccagttgcaccaaggttaccc 37024732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 38879713 - 38879641
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||| || |||||||||||    
T  38879713 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtac 38879641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 43334210 - 43334158
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccct 412  Q
    ||||| |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  43334210 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccct 43334158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 12006341 - 12006404
Alignment:
Q  245 gtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgta 308  Q
    ||||||||||| |||  |||| ||||||||||||||||||||||| |||| || ||||||||||    
T  12006341 gtgcactaaagctcccgcataggcagggtctgggaaggggtcccaccattattggtgtattgta 12006404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 38879589 - 38879538
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  38879589 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 38879538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 4619233 - 4619287
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttacccttc 414  Q
    ||||| || ||| |||||||||||||||||||| ||||| |||||||||||||||    
T  4619233 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttacccttc 4619287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 24449020 - 24448962
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||| |||| |||||||| |||||||||||||| |||||    
T  24449020 gcaacccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccaccattt 24448962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 27328764 - 27328706
Alignment:
Q  356 acctgtgacatttcagccacatgacaacaactttacctgttgcaccaaggttacccttc 414  Q
    ||||||||| |||||| ||||||||||||||||||||  ||||  ||||||||||||||    
T  27328764 acctgtgacctttcagtcacatgacaacaactttaccaattgcgtcaaggttacccttc 27328706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 1565433 - 1565388
Alignment:
Q  366 tttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  1565433 tttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 1565388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 20135736 - 20135664
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||| ||| |||| |||| || ||||| |||||||||||||| |||| || |||||||||||    
T  20135736 gcaacccggtgcactgaagctcctgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtac 20135664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 31299627 - 31299591
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttac 409  Q
    |||||||||||||||||||| ||||||||||||||||    
T  31299627 cacatgacaacaactttaccagttgcaccaaggttac 31299591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 43334334 - 43334263
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    ||||||| ||||||||||| |||  |||  |||||||| |||||||||||||| ||||||| |||||||||||    
T  43334334 gcaacccggtgcactaaagctcccgcatc-gcagggtccgggaaggggtcccaccatttttggtgtattgtac 43334263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 24448898 - 24448847
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  24448898 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 24448847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 35710321 - 35710270
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| ||||||  ||||||||||||||||||| ||||| ||||||||||||    
T  35710321 gtgacctttcagttacatgacaacaactttaccagttgcgccaaggttaccc 35710270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 41014327 - 41014276
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| || ||| |||||||||||||||||||| ||||| ||||||||||||    
T  41014327 gtgaccttccagtcacatgacaacaactttaccagttgcgccaaggttaccc 41014276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 2838773 - 2838735
Alignment:
Q  373 cacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  2838773 cacatgacaacaactttaccggttgcgccaaggttaccc 2838735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 16957444 - 16957386
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||||    
T  16957444 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 16957386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 22861793 - 22861847
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttacccttc 414  Q
    ||||| |||||| |||||||||||||||||| | ||||  |||||||||||||||    
T  22861793 gtgacctttcagtcacatgacaacaactttatcagttgtgccaaggttacccttc 22861847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 59109 - 59037
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattttttgtgtattgtac 309  Q
    |||||||  |||||||||| |||  |||| |||| |||||||||||||||||| ||||||| |||||||||||    
T  59109 gcaacccgatgcactaaagctcccgcatacgcagagtctgggaaggggtcccaccatttttggtgtattgtac 59037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 13150 - 13201
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  13150 gtgacctttcagtcacatgacaacaactttaccggttgcgccaaggttaccc 13201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 13029 - 13086
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcatt 294  Q
    ||||||| |||||||||||  ||  |||| ||||||||||||||||||||||| ||||    
T  13029 gcaacccggtgcactaaagcccccgcatacgcagggtctgggaaggggtcccaccatt 13086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 30587 - 30536
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  30587 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 30536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 10940 - 10882
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||||||||||||||| |||  |||| |||||||| |||||||||||||| |||||    
T  10940 gcaacccagtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 10882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 10818 - 10773
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaagg 405  Q
    ||||| || ||| |||||||||||||||||||| ||||||||||||    
T  10818 gtgaccttccagtcacatgacaacaactttaccagttgcaccaagg 10773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 24895 - 24945
Alignment:
Q  361 tgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    |||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  24895 tgacctttcagtcacatgacaacaactttaccagttgcgccaaggttaccc 24945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 46961 - 46903
Alignment:
Q  237 gcaacccagtgcactaaagttcctacataagcagggtctgggaaggggtcccatcattt 295  Q
    ||||||| ||||||||||| |||  |||| |||||||| |||||||||||||| |||||    
T  46961 gcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 46903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 226533 - 226583
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttacc 410  Q
    ||||| |||||| |||||||||||||||||||| ||||| |||||||||||    
T  226533 gtgacctttcagtcacatgacaacaactttaccagttgcgccaaggttacc 226583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 83883 - 83832
Alignment:
Q  360 gtgacatttcagccacatgacaacaactttacctgttgcaccaaggttaccc 411  Q
    ||||| |||||| |||||||||||||||||||  ||||| ||||||||||||    
T  83883 gtgacctttcagtcacatgacaacaactttactagttgcgccaaggttaccc 83832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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