View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15237_high_28 (Length: 221)
Name: NF15237_high_28
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 16978017 - 16977827
Alignment:
| Q |
13 |
gcataggggaatatgcatagttgggcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcccggtccaatccacggaggat |
112 |
Q |
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| T |
16978017 |
gcataggggaatatgcatagttgggcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcccggtccaatccacggaggat |
16977918 |
T |
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| Q |
113 |
ccttcgatgtaacattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgtagtt |
203 |
Q |
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| T |
16977917 |
ccttcgatgtaacattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgtagtt |
16977827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 17029889 - 17029699
Alignment:
| Q |
13 |
gcataggggaatatgcatagttgggcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcccggtccaatccacggaggat |
112 |
Q |
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| T |
17029889 |
gcataggggaatatgcatagttgcgcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcctgatccaatccacggaggat |
17029790 |
T |
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| Q |
113 |
ccttcgatgtaacattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgtagtt |
203 |
Q |
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| T |
17029789 |
ccttcgatgtagcattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgtagtt |
17029699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 17048227 - 17048037
Alignment:
| Q |
13 |
gcataggggaatatgcatagttgggcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcccggtccaatccacggaggat |
112 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
17048227 |
gcataggggaatatgcatagttgcgcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcctgatccaatccacggaggat |
17048128 |
T |
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| Q |
113 |
ccttcgatgtaacattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgtagtt |
203 |
Q |
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| T |
17048127 |
ccttcgatgtagcattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgtagtt |
17048037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 17109342 - 17109162
Alignment:
| Q |
20 |
ggaatatgcatagttgggcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcccggtccaatccacggaggatccttcga |
119 |
Q |
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||||| |||| |||||| || ||||||||||||||| ||||||||||||||||||||||||||| | | |||| || ||| ||||||||||||| | | |
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| T |
17109342 |
ggaatttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataaggcactcccgatcaaatgcacggaggatcctccca |
17109243 |
T |
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| Q |
120 |
tgtaacattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgta |
200 |
Q |
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| T |
17109242 |
agcaacatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgcaattgattagacgta |
17109162 |
T |
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