View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15237_high_3 (Length: 661)

Name: NF15237_high_3
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15237_high_3
NF15237_high_3
[»] chr2 (5 HSPs)
chr2 (65-560)||(12324589-12325084)
chr2 (80-415)||(33789780-33790095)
chr2 (356-414)||(39814374-39814432)
chr2 (158-263)||(18955399-18955505)
chr2 (606-641)||(12324565-12324600)
[»] chr1 (19 HSPs)
chr1 (79-414)||(8788532-8788864)
chr1 (54-405)||(10582611-10582939)
chr1 (54-298)||(49122130-49122367)
chr1 (80-405)||(8089719-8090021)
chr1 (78-405)||(10583817-10584121)
chr1 (127-417)||(49121838-49122108)
chr1 (427-582)||(12900881-12901036)
chr1 (79-405)||(49123173-49123476)
chr1 (445-619)||(4520674-4520844)
chr1 (450-626)||(46502748-46502922)
chr1 (128-289)||(23541015-23541176)
chr1 (80-201)||(3815217-3815336)
chr1 (356-413)||(5721695-5721752)
chr1 (136-201)||(36346593-36346658)
chr1 (333-405)||(5177304-5177378)
chr1 (333-410)||(11359600-11359673)
chr1 (136-201)||(19950390-19950455)
chr1 (603-635)||(49138199-49138231)
chr1 (147-195)||(17826223-17826271)
[»] scaffold0026 (2 HSPs)
scaffold0026 (80-413)||(80600-80930)
scaffold0026 (87-413)||(79404-79727)
[»] chr3 (16 HSPs)
chr3 (87-413)||(592384-592707)
chr3 (80-413)||(48637538-48637868)
chr3 (80-419)||(40976659-40977002)
chr3 (80-405)||(7197623-7197929)
chr3 (80-414)||(54994511-54994822)
chr3 (80-260)||(45826152-45826329)
chr3 (80-315)||(2386292-2386528)
chr3 (321-413)||(45826361-45826453)
chr3 (127-246)||(51274436-51274555)
chr3 (333-413)||(35389152-35389228)
chr3 (356-414)||(25184579-25184637)
chr3 (339-386)||(2386536-2386583)
chr3 (143-202)||(8638949-8639008)
chr3 (136-179)||(42510646-42510688)
chr3 (136-195)||(49987229-49987286)
chr3 (435-463)||(50372002-50372030)
[»] chr5 (14 HSPs)
chr5 (78-405)||(41050923-41051245)
chr5 (55-299)||(39702793-39703034)
chr5 (80-299)||(39701588-39701804)
chr5 (80-405)||(29526038-29526346)
chr5 (54-299)||(29527225-29527464)
chr5 (80-405)||(22950174-22950476)
chr5 (79-297)||(19934559-19934770)
chr5 (80-193)||(19139374-19139484)
chr5 (141-201)||(35144558-35144618)
chr5 (333-410)||(41108823-41108896)
chr5 (333-410)||(18690882-18690955)
chr5 (334-405)||(29527481-29527552)
chr5 (356-413)||(33215362-33215419)
chr5 (333-385)||(19934487-19934539)
[»] chr8 (7 HSPs)
chr8 (79-405)||(40254297-40254617)
chr8 (80-403)||(2411061-2411378)
chr8 (87-195)||(21661182-21661287)
chr8 (136-202)||(5176600-5176665)
chr8 (356-414)||(36241366-36241424)
chr8 (452-561)||(37263988-37264096)
chr8 (80-158)||(26246968-26247043)
[»] chr4 (8 HSPs)
chr4 (168-414)||(45638746-45638997)
chr4 (430-591)||(49272656-49272817)
chr4 (79-405)||(11961941-11962244)
chr4 (414-636)||(52723825-52724053)
chr4 (80-209)||(3567053-3567179)
chr4 (134-203)||(27869367-27869436)
chr4 (136-195)||(32992387-32992445)
chr4 (136-169)||(54291698-54291731)
[»] scaffold0227 (3 HSPs)
scaffold0227 (55-414)||(10971-11314)
scaffold0227 (80-257)||(12263-12437)
scaffold0227 (333-405)||(12136-12208)
[»] chr7 (12 HSPs)
chr7 (54-299)||(6081202-6081440)
chr7 (80-299)||(6082409-6082621)
chr7 (450-635)||(39773311-39773496)
chr7 (80-201)||(17901154-17901274)
chr7 (544-609)||(29346786-29346851)
chr7 (333-405)||(27021157-27021232)
chr7 (333-405)||(6081112-6081184)
chr7 (333-405)||(6082319-6082391)
chr7 (356-412)||(17166131-17166187)
chr7 (544-582)||(42863781-42863819)
chr7 (83-197)||(27021363-27021472)
chr7 (546-582)||(29367312-29367348)
[»] chr6 (9 HSPs)
chr6 (58-405)||(18132967-18133290)
chr6 (80-415)||(21535609-21535921)
chr6 (80-405)||(18131782-18132084)
chr6 (80-260)||(21395591-21395768)
chr6 (82-189)||(7033339-7033443)
chr6 (80-201)||(4303035-4303153)
chr6 (212-298)||(7033443-7033525)
chr6 (80-190)||(16189671-16189780)
chr6 (493-565)||(6033315-6033388)
[»] scaffold0011 (3 HSPs)
scaffold0011 (80-299)||(205589-205801)
scaffold0011 (80-260)||(211666-211843)
scaffold0011 (333-415)||(205819-205901)
[»] scaffold0018 (3 HSPs)
scaffold0018 (127-405)||(177907-178165)
scaffold0018 (346-405)||(177784-177843)
scaffold0018 (349-405)||(177831-177887)
[»] scaffold0274 (1 HSPs)
scaffold0274 (450-636)||(5230-5416)
[»] scaffold0271 (1 HSPs)
scaffold0271 (450-636)||(3874-4060)


Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 65 - 560
Target Start/End: Complemental strand, 12325084 - 12324589
Alignment:
Q  65 tgctctgataccggttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcc 164  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12325084 tgctctgataccggttgatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaaggaattcgagagtcttggttctctcc 12324985  T
Q  165 cctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactct 264  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  12324984 cctccaaaaattcgagagtttggtctctccctaccaatcctttatcgcaatccctgaatagctttcttttcctttgcatcttatttataatactaactct 12324885  T
Q  265 ctcatatagtagttacatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaata 364  Q
    ||| ||||||||||||| | ||||||||||||||  ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  12324884 ctcctatagtagttacacataagtttagtagacaaccactactgcagacaacaattactgcacataagtaacaattactaatttataatactattaaata 12324785  T
Q  365 aacaactagtattatataacttcttcccttaggagtcctatatctaacagtttagccctttataattgatgaatgcagtgaaatagatgaaataactttg 464  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12324784 aacaactagtattatataacttctgcccttaggagtcctatatccaacagtttagccctttgtaattgatgaatgcagtgaaatagatgaaataactttg 12324685  T
Q  465 tattgaatttaatgaaaaacacaatacaagagaaattgattgaatacaatgtaaattgtaaacttaagaaaccagtaggaagatagaagaagactt 560  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  12324684 tattgaatttaatgaaaaacacaatacaagataaattgactgaatacaatgtaaattgtaaacttaagaaactagtaggaatatagaagaagactt 12324589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 80 - 415
Target Start/End: Complemental strand, 33790095 - 33789780
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||    
T  33790095 tgatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaagaaattcgagagtcttggttctctcccctccaagaatttga 33789996  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||| ||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||     || |||||  ||||    
T  33789995 gagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----gtcctatagctgtta 33789900  T
Q  280 catagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattat 379  Q
    ||||||||||||||||||||                |||| ||| || | || ||||| ||||| |||||||||| |||||||||||| |||| |||| |    
T  33789899 catagaagtttagtagacag----------------caattactacacacaagtaacagttacttatttataatattattaaataaactactattattct 33789816  T
Q  380 ataacttcttcccttaggagtcctatatctaacagt 415  Q
    |||||| || ||||||||||||||||  ||||||||    
T  33789815 ataactgctgcccttaggagtcctattactaacagt 33789780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 39814432 - 39814374
Alignment:
Q  356 tattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaacag 414  Q
    ||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||||    
T  39814432 tattaaataaacaactaatattttataacttatgcccttaggagtcctatatctaacag 39814374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 263
Target Start/End: Complemental strand, 18955505 - 18955399
Alignment:
Q  158 tctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatc-ttatttataata 256  Q
    |||||||| |||||||||| || || |||||||||||||||||||| ||||||  |||  | |||| |  ||||||| || |||||| |||||||||| |    
T  18955505 tctctcccttccaagaattagagagattggtctctccctaccaatcctttatccaaataaccgaattctcttcttttcctctgcatctttatttataaca 18955406  T
Q  257 ctaactc 263  Q
    |||||||    
T  18955405 ctaactc 18955399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 641
Target Start/End: Complemental strand, 12324600 - 12324565
Alignment:
Q  606 agaaggagacttttcttcaattttcttcatgtccac 641  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12324600 agaagaagacttttcttcaattttcttcatgtccac 12324565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 79 - 414
Target Start/End: Original strand, 8788532 - 8788864
Alignment:
Q  79 ttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcg 178  Q
    ||||||| |||||| ||||||||||||| | |||||||| |||||||||||  ||| |||| |||| |||||||||||||||||||||||||||||||||    
T  8788532 ttgataggaactgatatcaaaatataaactaatagtaat-attacaatata--atcccaagaaattagagagtcttggttctctcccctccaagaattcg 8788628  T
Q  179 aaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtt 278  Q
    |||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| ||||| ||||    
T  8788629 aaagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaactcactcctatagcagtt 8788728  T
Q  279 acatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtatta 378  Q
    |||||  ||||||||||||| ||||||||||||||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||     
T  8788729 acatattagtttagtagacaaacactactgcagacagcaattactgcacataagtaacagttactaatttataatactattaaataaacaactagtattc 8788828  T
Q  379 tataacttcttcccttaggagtcctatatctaacag 414  Q
    ||||||||||||||||||||||||||||||||||||    
T  8788829 tataacttcttcccttaggagtcctatatctaacag 8788864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 54 - 405
Target Start/End: Complemental strand, 10582939 - 10582611
Alignment:
Q  54 tggatcagaattgctctgataccggttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtct 153  Q
    |||||||||| |||||||||||| |||||||| |||||| ||||||||||||| | |||||||  ||||||||| |  ||| |||| |||||||||||||    
T  10582939 tggatcagaactgctctgataccagttgataggaactgatatcaaaatataaactaatagtaag-attacaataca--atcccaagaaattcgagagtct 10582843  T
Q  154 tggttctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttata 253  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||||| |||||| |||||||||||||||||||||||  | |||||||||||||||    
T  10582842 tggttctctcccctccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttata 10582743  T
Q  254 atactaactctctcatatagtagttacatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataat 353  Q
    |||||||     || |||||  ||||||||||||||||||||||||                |||| ||| || | || ||||| ||||| |||||||||    
T  10582742 atactaa----gtcctatagctgttacatagaagtttagtagacag----------------caattactacacacaagtaacagttacttatttataat 10582663  T
Q  354 actattaaataaacaactagtattatataacttcttcccttaggagtcctat 405  Q
    | |||||||||||| |||| |||| ||||||| || ||||||||||||||||    
T  10582662 attattaaataaactactattattctataactgctgcccttaggagtcctat 10582611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 54 - 298
Target Start/End: Complemental strand, 49122367 - 49122130
Alignment:
Q  54 tggatcagaattgctctgataccggttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtct 153  Q
    |||||||||| |||||||||||| |||||||| |||||| || |||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||    
T  49122367 tggatcagaactgctctgataccagttgataggaactgatatgaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtct 49122271  T
Q  154 tggttctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttata 253  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||||    
T  49122270 tggttctctcccctccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttata 49122171  T
Q  254 atactaactctctcatatagtagttacatagaagtttagtagaca 298  Q
    |||||||     || |||||  ||||||||||||||||| |||||    
T  49122170 atactaa----gtcctatagctgttacatagaagtttagcagaca 49122130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 80 - 405
Target Start/End: Original strand, 8089719 - 8090021
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  8089719 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagtattcga 8089815  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||||||| |||||| |||||||||||||||||||||||  | ||||||||||||||||||||||     || |||||  ||||    
T  8089816 gagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaa----gtcctatagctgtta 8089911  T
Q  280 catagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattat 379  Q
    ||||||||||||||||||||                |||| ||| || | || ||||| ||||| |||||||||| |||||||||||| |||| |||| |    
T  8089912 catagaagtttagtagacag----------------caattactacacacaagtaacagttacttatttataatattattaaataaactactattattct 8089995  T
Q  380 ataacttcttcccttaggagtcctat 405  Q
    |||||| || ||||||||||||||||    
T  8089996 ataactgctgcccttaggagtcctat 8090021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 78 - 405
Target Start/End: Complemental strand, 10584121 - 10583817
Alignment:
Q  78 gttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattc 177  Q
    |||||||| |||||| ||||||||||||| | |||||||  ||||||||| |  ||| |||| |||||||||||||||||||||||||||||||| ||||    
T  10584121 gttgataggaactgatatcaaaatataaactaatagtaag-attacaataca--atcccaagaaattcgagagtcttggttctctcccctccaagtattc 10584025  T
Q  178 gaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagt 277  Q
    || || |||||||||||||||||||| |||||| |||||||||||||||||||||||  | |||||||||||||||||||||| || |    ||||  ||    
T  10584024 gagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaagtccc----atagctgt 10583929  T
Q  278 tacatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtatt 377  Q
    ||||||||||||||||||||||                |||| ||| || | || ||||| ||||| |||||||||| |||||||||||| |||| ||||    
T  10583928 tacatagaagtttagtagacag----------------caattactacacacaagtaacagttacttatttataatattattaaataaactactattatt 10583845  T
Q  378 atataacttcttcccttaggagtcctat 405  Q
     ||||||| || ||||||||||||||||    
T  10583844 ctataactgctgcccttaggagtcctat 10583817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 127 - 417
Target Start/End: Complemental strand, 49122108 - 49121838
Alignment:
Q  127 atataatctcaaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacc 226  Q
    |||||||| |||| |||| ||||||||||||||||||||||||||| |||||| || ||| |||||||||||||||| |||||| |||||||||||||||    
T  49122108 atataatcccaagaaatttgagagtcttggttctctcccctccaagtattcgagagcttgatctctccctaccaatcctttatcccaatccctgaatacc 49122009  T
Q  227 tttctttttctttgcatcttatttataatactaactctctcatatagtagttacatagaagtttagtagacagacactactgcagacaacaatcactgca 326  Q
    |||||||| || ||||||||||||||||||||||     || |||||  ||||||||||||||||||                |||||||||| ||| ||    
T  49122008 tttcttttcctctgcatcttatttataatactaa----gtcctatagctgttacatagaagtttagt----------------agacaacaattacttca 49121929  T
Q  327 aataactaacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaacagttt 417  Q
     | || ||||| ||||| |||||||||| |||||||||||| |||| |||| ||||||| || ||||||||||||||||  ||||||||||    
T  49121928 cacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgcccttaggagtcctattactaacagttt 49121838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 427 - 582
Target Start/End: Complemental strand, 12901036 - 12900881
Alignment:
Q  427 taattgatgaatgcagtgaaatagatgaaataactttgtattgaatttaatgaaaaacacaatacaagagaaattgattgaatacaatgtaaattgtaaa 526  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||  |||||||||||  ||    
T  12901036 taattgatgaatgaaatgaaatagatgaaatgactttgtattgaattcaatgaaaaacacaatacaagagaaagtgattgaatggaatgtaaattgacaa 12900937  T
Q  527 cttaagaaaccagtaggaagatagaagaagacttagtccaaagacttaagtcatta 582  Q
    |||||  ||| ||||| |||||||||||||||||||| ||||||| |||| |||||    
T  12900936 cttaatcaactagtagaaagatagaagaagacttagttcaaagacctaagccatta 12900881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 79 - 405
Target Start/End: Complemental strand, 49123476 - 49123173
Alignment:
Q  79 ttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcg 178  Q
    ||||||| |||||| ||||||||||||| | |||||||  |||| ||||||  ||| |||| |||||||||||||||||||||||||||||||| |||||    
T  49123476 ttgataggaactgatatcaaaatataaactaatagtaag-attagaatata--atcccaagaaattcgagagtcttggttctctcccctccaagtattcg 49123380  T
Q  179 aaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtt 278  Q
    |  |     |||||||||||||||| |||| | |||||||||||||||||||||||  | ||||||||||||||||||||||     || |||||  |||    
T  49123379 agtgcccaatctctccctaccaatcctttaccccaatccctgaatacctttcttttcttctgcatcttatttataatactaa----gtcctatagctgtt 49123284  T
Q  279 acatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtatta 378  Q
    |||||||||||||||||||||                |||| ||| || | || ||||| ||||| |||||||||| |||||||||||| |||| ||||     
T  49123283 acatagaagtttagtagacag----------------caattactacacacaagtaacagttacttatttataatattattaaataaactactattattc 49123200  T
Q  379 tataacttcttcccttaggagtcctat 405  Q
    ||||||| || ||||||||||||||||    
T  49123199 tataactgctgcccttaggagtcctat 49123173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 445 - 619
Target Start/End: Complemental strand, 4520844 - 4520674
Alignment:
Q  445 aaatagatgaaataactttgtattgaatttaatgaaaaacacaatacaagagaaattgattgaatacaatgtaaattgtaaacttaagaaaccagtagga 544  Q
    ||||||||||||||||| |||||  |||| | |||||||||||||||| | |||||||||| |||||||||||||||   ||||| |||| | ||||| |    
T  4520844 aaatagatgaaataactatgtat--aattcactgaaaaacacaatacagg-gaaattgattaaatacaatgtaaattaacaactttagaa-ctagtagaa 4520749  T
Q  545 agatagaagaagacttagtccaaagacttaagtcattaatcttaaagagaatatcaaggggagaaggagactttt 619  Q
    ||| | ||||||||||||| |||||||||||||||||| ||| || |||| || ||| || ||||||||||||||    
T  4520748 agacaaaagaagacttagttcaaagacttaagtcattattctcaaggagagtaccaaaggaagaaggagactttt 4520674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 626
Target Start/End: Complemental strand, 46502922 - 46502748
Alignment:
Q  450 gatgaaataactttgtattgaatttaatgaaaaacacaatacaagagaaattgattgaatacaatgtaaattgtaaacttaagaaaccagtaggaagata 549  Q
    ||||||||| || ||||||||||| | | |||||||||||||||||||||||||| ||||| |||||||||||  |||||||  ||  ||||| || |||    
T  46502922 gatgaaatagctctgtattgaattcactaaaaaacacaatacaagagaaattgatcgaataaaatgtaaattgacaacttaatgaattagtagaaaaata 46502823  T
Q  550 gaagaagacttagtccaaagacttaagtcattaatcttaaagagaatatcaaggggagaaggagacttttcttcaat 626  Q
    ||||||||||||||| |||||| |||| ||||| ||| || |||| || |||    || ||||||||||||||||||    
T  46502822 gaagaagacttagtctaaagacctaagccattactctcaaggagagtaccaa--aaaggaggagacttttcttcaat 46502748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 128 - 289
Target Start/End: Original strand, 23541015 - 23541176
Alignment:
Q  128 tataatctcaaggaattcgagagtcttggttctctcccctccaagaatt--cgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatac 225  Q
    ||||||| |||| ||||| |||||||||||| ||| || |||||| |||  | | || ||||||||||||||||||||  ||||| ||||||||||||      
T  23541015 tataatcccaagaaattcaagagtcttggttttcttccttccaagtattttcaagagcttggtctctccctaccaatccattatcccaatccctgaatgt 23541114  T
Q  226 ctttctttttctttgcatc-ttatttataatactaactctctcatatagtagttacatagaagtt 289  Q
    | ||||||| ||||||||| ||||| |||||||||||||   | ||||| |||||||||||||||    
T  23541115 ccttcttttcctttgcatctttattcataatactaactc---cctatagcagttacatagaagtt 23541176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 3815336 - 3815217
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    ||||||||||||| ||||||||| ||||| ||| |||| || |||||| ||  || || | |||||||||||||||||||||||||||||||||||||||    
T  3815336 tgatagaaactgatatcaaaatacaaattaatattaataat-acaatagatt-tcccatgaaattcgagagtcttggttctctcccctccaagaattcga 3815239  T
Q  180 aagtttggtctctccctaccaa 201  Q
      | ||||||||||||| ||||    
T  3815238 gtgcttggtctctcccttccaa 3815217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 5721752 - 5721695
Alignment:
Q  356 tattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaaca 413  Q
    ||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||    
T  5721752 tattaaataaacaactaatattttataacttatgcccttaggagtcctatatctaaca 5721695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 36346593 - 36346658
Alignment:
Q  136 caaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccctaccaa 201  Q
    |||| |||||||||||||||||||||||||||||| |||||||| || ||| ||||||||| ||||    
T  36346593 caagaaattcgagagtcttggttctctcccctccatgaattcgagagcttgatctctcccttccaa 36346658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 5177378 - 5177304
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaa---ctagtattatataacttcttcccttaggagtcctat 405  Q
    ||||| |||||||||||||||| |||||||||| |||   ||| ||||||||| ||||||||||||||||||||||    
T  5177378 taacagttactaatttataata-tattaaataatcaattactaatattatatagcttcttcccttaggagtcctat 5177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 11359600 - 11359673
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctatatcta 410  Q
    ||||||||||||||| |||    ||||||||||||||||| |||| |||||||| | | |||||||||||||||||||    
T  11359600 taacaattactaattaata----tattaaataaacaactaatattctataacttatgctcttaggagtcctatatcta 11359673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 19950390 - 19950455
Alignment:
Q  136 caaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccctaccaa 201  Q
    |||| |||| ||||| |||||||||||||||||||||||||||| || ||||| | ||||| ||||    
T  19950390 caagaaatttgagagccttggttctctcccctccaagaattcgagagcttggtttttccctcccaa 19950455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 635
Target Start/End: Complemental strand, 49138231 - 49138199
Alignment:
Q  603 gggagaaggagacttttcttcaattttcttcat 635  Q
    |||||||||||||||||||||||||||||||||    
T  49138231 gggagaaggagacttttcttcaattttcttcat 49138199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 17826223 - 17826271
Alignment:
Q  147 agagtcttggttctctcccctccaagaattcgaaagtttggtctctccc 195  Q
    |||||||||| ||||  |||||||||||||||| || ||||||||||||    
T  17826223 agagtcttgggtctcctccctccaagaattcgagagcttggtctctccc 17826271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 80 - 413
Target Start/End: Complemental strand, 80930 - 80600
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||| |||||||||||  ||| |||  |||||||||||||||||||||||||||||||||||||||    
T  80930 tgataggaactgatatcaaaatataaactaatagtaat-attacaatata--atcccaataaattcgagagtcttggttctctcccctccaagaattcga 80834  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||||    
T  80833 gagcttggtctctccctacctatcctttatcccaatccctgaatacctttctttttctctgcatcttatttataatactaactcactcctatagcagtta 80734  T
Q  280 catagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattat 379  Q
    ||||  |||||||||||||| ||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| |    
T  80733 catattagtttagtagacaggcactactgcagacaacaattactgcacataagtaacagttactaatttataatactattaaataaacaactagtattct 80634  T
Q  380 ataacttcttcccttaggagtcctatatctaaca 413  Q
    ||||||||| ||||||||||||||||||||||||    
T  80633 ataacttctgcccttaggagtcctatatctaaca 80600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 87 - 413
Target Start/End: Complemental strand, 79727 - 79404
Alignment:
Q  87 aactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttg 186  Q
    |||||| ||||||||||||| | |||||||| |||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||| || |||    
T  79727 aactgatatcaaaatataaactaatagtaat-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagcttg 79631  T
Q  187 gtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagttacatagaa 286  Q
    |||||||| |||| ||| ||||||  ||||| ||||||||||| |||| || ||||||||||||||||||||||||| ||| || || |||||||||  |    
T  79630 gtctctccgtacctatcctttatcctaatccatgaatacctttattttcctctgcatcttatttataatactaactcactcctacagcagttacatatta 79531  T
Q  287 gtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattatataactt 386  Q
    ||||||||||||| |||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  79530 gtttagtagacaggcactactgcagacagcaattactgcacataagtaacagttactaatttataatactattaaataaaatactagtattctataactt 79431  T
Q  387 cttcccttaggagtcctatatctaaca 413  Q
    || ||||||||||||||||||||||||    
T  79430 ctgcccttaggagtcctatatctaaca 79404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 87 - 413
Target Start/End: Complemental strand, 592707 - 592384
Alignment:
Q  87 aactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttg 186  Q
    |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||| |||||||||||||||||||||||||||||| || |||    
T  592707 aactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagggtcttggttctctcccctccaagaattcgagagcttg 592611  T
Q  187 gtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagttacatagaa 286  Q
    | ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||||||  |    
T  592610 ggctctccctaccaatcctttatcccaatccctgaatacctttcttttcctttgcatcttatttataatactaactcactcctatagcagttacatatta 592511  T
Q  287 gtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattatataactt 386  Q
    ||||||||||||| |||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  592510 gtttagtagacaggcactactgcagacagcaattactgcacataagtaacagttactaatttataatactattaaataaacaactagtattctataactt 592411  T
Q  387 cttcccttaggagtcctatatctaaca 413  Q
    |||||||||||||||||||||||||||    
T  592410 cttcccttaggagtcctatatctaaca 592384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 80 - 413
Target Start/End: Original strand, 48637538 - 48637868
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||| ||||||||||||||||||||||||||| ||||||    
T  48637538 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaatttgagagtcttggttctctcccctccaagtattcga 48637634  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||||||| |||||| |||||||| ||||||| |||||| || ||||||||||||||||||||||||| ||| ||||| |||||    
T  48637635 gagcttggtctctccctaccaatcctttatcccaatccctcaatacctctcttttcctctgcatcttatttataatactaactcactcctatagcagtta 48637734  T
Q  280 catagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattat 379  Q
    ||||  |||||||||||||| |||||||||||||| |||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||| |    
T  48637735 catattagtttagtagacaggcactactgcagacagcaattactgcacataagtaatagttactaatttataatactattaaataaacaactagtattct 48637834  T
Q  380 ataacttcttcccttaggagtcctatatctaaca 413  Q
    ||||| ||| ||||||||||||||||||||||||    
T  48637835 ataacctctgcccttaggagtcctatatctaaca 48637868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 80 - 419
Target Start/End: Complemental strand, 40977002 - 40976659
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||| |||||||||||  ||| |||  |||||||||||||||||||||||||||||||||||||||    
T  40977002 tgataggaactgatatcaaaatataaactaatagtaat-attacaatata--atcccaaaaaattcgagagtcttggttctctcccctccaagaattcga 40976906  T
Q  180 aagtttggtctctcccta-------ccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatata 272  Q
     || ||||||||||| ||       ||| || |||||| ||||||||| || |||||||||| || |||||||||||||||| ||||| || ||| ||||    
T  40976905 gagcttggtctctccatagtccataccagtcctttatcccaatccctgcatgcctttcttttcctctgcatcttatttataagactaattccctcctata 40976806  T
Q  273 gtagttacatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaacta 372  Q
    | |||||||| |||||||||||| |||  |||||||||| || |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  40976805 gcagttacattgaagtttagtagccagcaactactgcagccagcaattactgcacataagtaacaattactaatttataatactattaaataaacaacta 40976706  T
Q  373 gtattatataacttcttcccttaggagtcctatatctaacagtttag 419  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||    
T  40976705 gtattctataacttctgcccttaggagtcctatatctaacaatttag 40976659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 80 - 405
Target Start/End: Complemental strand, 7197929 - 7197623
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  7197929 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagtattcga 7197833  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||||||| |||||| |||||||||||| |||||||||| || ||||||||||||||||||||||||||||| | ||| |||||    
T  7197832 gagcttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaactctctcctgtagcagtta 7197733  T
Q  280 catagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattat 379  Q
    ||||||||||| ||||||||                |||| |||||| |||| ||||| | |||||||||||||| |||||||||||| |||| |||| |    
T  7197732 catagaagttttgtagacag----------------caattactgcacataagtaacagtaactaatttataatattattaaataaactactattattct 7197649  T
Q  380 ataacttcttcccttaggagtcctat 405  Q
    |||||| || ||||||||||||||||    
T  7197648 ataactactgcccttaggagtcctat 7197623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 80 - 414
Target Start/End: Complemental strand, 54994822 - 54994511
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  54994822 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagaattcga 54994726  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||     || ||||| |||||    
T  54994725 gagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----gtcctatagcagtta 54994630  T
Q  280 catagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattat 379  Q
    ||||||||||||||||||||                |||| ||| || |||| ||||| ||||| |||||||||| |||||||||||| |||| |||| |    
T  54994629 catagaagtttagtagacag----------------caattactacacataagtaacagttacttatttataatattattaaataaactactattattct 54994546  T
Q  380 ataacttcttcccttaggagtcctatatctaacag 414  Q
    |||||| || ||||||||||||||||  |||||||    
T  54994545 ataactgctgcccttaggagtcctattactaacag 54994511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 80 - 260
Target Start/End: Original strand, 45826152 - 45826329
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||| |||||||||||  ||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  45826152 tgataggaactgatatcaaaatataaactaatagtaat-attacaatata--atcccaagaaattagagagtcttggttctctcccctccaagaattcga 45826248  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaa 260  Q
     || |||||||||||||||| ||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  45826249 gagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa 45826329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 80 - 315
Target Start/End: Original strand, 2386292 - 2386528
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaat-------tattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaag 172  Q
    ||||||||||||| ||||||||||||| | ||||||||       ||||||||||||  ||| |||| ||||||||||||| ||||||||||||||||||    
T  2386292 tgatagaaactgatatcaaaatataaactaatagtaatatactaatattacaatata--atcccaagaaattcgagagtctcggttctctcccctccaag 2386389  T
Q  173 aattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatata 272  Q
    ||||||| || |||||||||||||||| ||| |||||| |||||||||||| |||||||||| || ||||||||||||||||||||||     || ||||    
T  2386390 aattcgagagcttggtctctccctacctatcctttatctcaatccctgaatgcctttcttttcctctgcatcttatttataatactaa----gtcctata 2386485  T
Q  273 gtagttacatagaagtttagtagacagacactactgcagacaa 315  Q
      ||||||||| |||||||||||||||  | ||||||||||||    
T  2386486 acagttacataaaagtttagtagacagcaattactgcagacaa 2386528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 321 - 413
Target Start/End: Original strand, 45826361 - 45826453
Alignment:
Q  321 actgcaaataactaacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaaca 413  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||    
T  45826361 actgcacataagtaacagttactaatttataatactattaaataaacaactagtgttctataacttctgcccttaggagtcctatatctaaca 45826453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 51274555 - 51274436
Alignment:
Q  127 atataatctcaaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacc 226  Q
    |||||||| |||| ||||||||||||||||||||| |||||||||||||| || || |||||||||||||||| ||| |||||| |||||||||||| ||    
T  51274555 atataatcccaagaaattcgagagtcttggttctcccccctccaagaatttgagagcttggtctctccctacctatcctttatcccaatccctgaatgcc 51274456  T
Q  227 tttctttttctttgcatctt 246  Q
     ||||||| || ||||||||    
T  51274455 cttcttttcctctgcatctt 51274436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 35389228 - 35389152
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaaca 413  Q
    ||||||||||||||| |||    ||||||||||||||||| |||| |||||||| | | ||||||||||||||||||||||    
T  35389228 taacaattactaattgata----tattaaataaacaactaatattttataacttatgcacttaggagtcctatatctaaca 35389152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 25184637 - 25184579
Alignment:
Q  356 tattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaacag 414  Q
    ||||||||||||||||| |||| |||||||| | |||||| ||||||||||||||||||    
T  25184637 tattaaataaacaactaatattctataacttatgcccttacgagtcctatatctaacag 25184579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 2386536 - 2386583
Alignment:
Q  339 ttactaatttataatactattaaataaacaactagtattatataactt 386  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  2386536 ttacttatttataatattattaaataaacaactagtattctataactt 2386583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 8639008 - 8638949
Alignment:
Q  143 ttcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccctaccaat 202  Q
    |||||||||||||| |||||||| |||||||||| || || ||| |||||||| ||||||    
T  8639008 ttcgagagtcttgggtctctcccttccaagaattagagagcttgttctctcccaaccaat 8638949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 42510688 - 42510646
Alignment:
Q  136 caaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  42510688 caaggaattcgagagtcttgggtctct-ccctccaagaattcga 42510646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 49987229 - 49987286
Alignment:
Q  136 caaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccc 195  Q
    |||| ||||||||||||||||| ||||||| |||||||||| || |||||||||||||||    
T  49987229 caagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 49987286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 463
Target Start/End: Complemental strand, 50372030 - 50372002
Alignment:
Q  435 gaatgcagtgaaatagatgaaataacttt 463  Q
    |||||||||||||||||||||||||||||    
T  50372030 gaatgcagtgaaatagatgaaataacttt 50372002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 4e-77; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 78 - 405
Target Start/End: Original strand, 41050923 - 41051245
Alignment:
Q  78 gttgatagaaactgacatcaaaat-ataaatttatagtaattattacaatatataatctcaaggaattc-gagagtcttggttctctcccctccaagaat 175  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| |||||| |  ||| |||| ||||| ||||||||||||||| ||||||||||||||    
T  41050923 gttgatagaaactgatatcaaaattataaatttatagtaattatcacaataga--atcccaagaaattccgagagtcttggttctgtcccctccaagaat 41051020  T
Q  176 tcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagta 275  Q
    || | || |||||||||||||||| ||| |||||| ||||||||||||| || |||||| || ||||||||||||||||||||||||||||| ||||  |    
T  41051021 tcaagagcttggtctctccctacctatcctttatcccaatccctgaatatctgtcttttcctctgcatcttatttataatactaactctctcctatatca 41051120  T
Q  276 gttacatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagta 375  Q
    ||||||||||||||||||||| ||  ||||||||||||| |||| |||||| |||| ||||| |||||||     || | ||||||||||||||||||      
T  41051121 gttacatagaagtttagtagatagcaactactgcagacagcaattactgcacataagtaacagttactaa-----aacattattaaataaacaactagct 41051215  T
Q  376 ttatataacttcttcccttaggagtcctat 405  Q
    || |||||||| | ||||||||||||||||    
T  41051216 ttctataacttatgcccttaggagtcctat 41051245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 55 - 299
Target Start/End: Original strand, 39702793 - 39703034
Alignment:
Q  55 ggatcagaattgctctgataccggttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtctt 154  Q
    |||||||||||||||||||||| |||||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| ||||||||||||||    
T  39702793 ggatcagaattgctctgataccagttgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtctt 39702889  T
Q  155 ggttctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataa 254  Q
    |||||||||||||||||| |||||| || |||||||||||||||| ||| |||||| |||||||||||| |||||||||| ||||||| |||||||||||    
T  39702890 ggttctctcccctccaagtattcgagagcttggtctctccctaccgatcctttatcccaatccctgaatgcctttcttttcctttgcaacttatttataa 39702989  T
Q  255 tactaactctctcatatagtagttacatagaagtttagtagacag 299  Q
    ||| ||||||||| ||||| |||||||||||||||||||||||||    
T  39702990 tacaaactctctcctatagcagttacatagaagtttagtagacag 39703034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 80 - 299
Target Start/End: Original strand, 39701588 - 39701804
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  39701588 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagtattcga 39701684  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||||||| |||||| |||||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||| |||||    
T  39701685 gagcttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaactctctcctatagcagtta 39701784  T
Q  280 catagaagtttagtagacag 299  Q
    ||||||||||||||||||||    
T  39701785 catagaagtttagtagacag 39701804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 80 - 405
Target Start/End: Original strand, 29526038 - 29526346
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| ||| |||||||||||||||||||||||||||||||||||    
T  29526038 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaatccgagagtcttggttctctcccctccaagaattcga 29526134  T
Q  180 aagtttggtctctccctaccaatcattt-atcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtt 278  Q
     || |||||||||||||||||||| ||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||     || |||||  |||    
T  29526135 gagcttggtctctccctaccaatcctttaatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----gtcctatagctgtt 29526230  T
Q  279 acatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtatta 378  Q
    |||||||||||||||||||||  | |||| || |||||           | || ||||| ||||| |||||||||| |||||||||||| |||| ||||     
T  29526231 acatagaagtttagtagacagcaattactacacacaac-----------acaagtaacagttacttatttataatattattaaataaactactattattc 29526319  T
Q  379 tataacttcttcccttaggagtcctat 405  Q
    ||||||| || ||||||||||||||||    
T  29526320 tataactgctgcccttaggagtcctat 29526346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 54 - 299
Target Start/End: Original strand, 29527225 - 29527464
Alignment:
Q  54 tggatcagaattgctctgataccggttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtct 153  Q
    |||||||||| |||| ||||||| |||||||| ||| || ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||    
T  29527225 tggatcagaactgctttgataccagttgataggaacagatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtct 29527321  T
Q  154 tggttctctcccc-tccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttat 252  Q
    ||||||||||||| ||||||||||| | || |||||||||||||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||     
T  29527322 tggttctctccccctccaagaattcaagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttaa 29527421  T
Q  253 aatactaactctctcatatagtagttacatagaagtttagtagacag 299  Q
    |||||||| ||   || ||||  ||||||||||||||||||||||||    
T  29527422 aatactaagtc---ca-atagctgttacatagaagtttagtagacag 29527464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 80 - 405
Target Start/End: Complemental strand, 22950476 - 22950174
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  22950476 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagtattcga 22950380  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||||||| |||||| |||||||||||||||||| |||| || ||||||||||||||||||||||     || |||||  ||||    
T  22950379 gagcttggtctctccctaccaatcctttatcccaatccctgaatacctttattttcctctgcatcttatttataatactaa----gtcctatagctgtta 22950284  T
Q  280 catagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattat 379  Q
    ||||||||||||||||||||                |||| ||| || | || ||||| ||||| |||||||||| |||||||||||| |||| |||| |    
T  22950283 catagaagtttagtagacag----------------caattactacacacaagtaacagttacttatttataatattattaaataaactactattattct 22950200  T
Q  380 ataacttcttcccttaggagtcctat 405  Q
    |||||| || ||||||||||||||||    
T  22950199 ataactgctgcccttaggagtcctat 22950174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 79 - 297
Target Start/End: Complemental strand, 19934770 - 19934559
Alignment:
Q  79 ttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcg 178  Q
    ||||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| ||||| |||||||||||||||||||||||||| |||||    
T  19934770 ttgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcaagagtcttggttctctcccctccaagtattcg 19934674  T
Q  179 aaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtt 278  Q
    | || |||||||||||||||||||| |||||| |||||||| ||| |||||||||| || |||||||||||||||||||||| |||    |||||| |||    
T  19934673 agagcttggtctctccctaccaatcctttatcccaatccctaaatgcctttcttttcctctgcatcttatttataatactaagtct----tatagttgtt 19934578  T
Q  279 acatagaagtttagtagac 297  Q
    |||||||||||||||||||    
T  19934577 acatagaagtttagtagac 19934559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 19139484 - 19139374
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    ||||||||||||| |||||||| |||| | |||||||  |||||||||||  ||| |||| |||||||||||||||||||||||||||||||||||| ||    
T  19139484 tgatagaaactgatatcaaaatttaaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagaattaga 19139388  T
Q  180 aagtttggtctctc 193  Q
     || ||||| ||||    
T  19139387 gagcttggtttctc 19139374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 35144558 - 35144618
Alignment:
Q  141 aattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccctaccaa 201  Q
    ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||||    
T  35144558 aattcgagagtcttggttctctcccctccaagaattcgagaccttggtctctcccttccaa 35144618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 333 - 410
Target Start/End: Complemental strand, 41108896 - 41108823
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctatatcta 410  Q
    ||||||||||||||| |||    ||||||||||||||||| |||| |||||||| | |||||||||||||||||||||    
T  41108896 taacaattactaattaata----tattaaataaacaactaatattctataacttatgcccttaggagtcctatatcta 41108823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 410
Target Start/End: Complemental strand, 18690955 - 18690882
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctatatcta 410  Q
    ||||||||||||||| |||    ||||||||||||||||| |||| |||||||| | | |||||||||||||||||||    
T  18690955 taacaattactaattaata----tattaaataaacaactaatattctataacttatgctcttaggagtcctatatcta 18690882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 29527481 - 29527552
Alignment:
Q  334 aacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctat 405  Q
    |||| ||||| |||||||||| |||||| ||||| |||| |||| ||||||| || ||||||||||||||||    
T  29527481 aacagttacttatttataatattattaagtaaactactattattctataactgctgcccttaggagtcctat 29527552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 33215362 - 33215419
Alignment:
Q  356 tattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaaca 413  Q
    ||||||||||||||||| |||| || ||||| |  |||||||||||||||||||||||    
T  33215362 tattaaataaacaactaatattctaaaacttatggccttaggagtcctatatctaaca 33215419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 19934539 - 19934487
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaactagtattatataact 385  Q
    ||||| ||||| |||||||||| |||||||||||| |||| |||| |||||||    
T  19934539 taacagttacttatttataatattattaaataaactactattattctataact 19934487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 6e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 79 - 405
Target Start/End: Complemental strand, 40254617 - 40254297
Alignment:
Q  79 ttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcg 178  Q
    ||||||||||| || ||||||||||||||| |||||||| ||||||||| |  ||| |||| |||||||||||||||||||||||||||||||||||| |    
T  40254617 ttgatagaaacagatatcaaaatataaattaatagtaat-attacaataga--atcccaagaaattcgagagtcttggttctctcccctccaagaatt-g 40254522  T
Q  179 aaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtt 278  Q
    | || |||||||||||||||||||| |||||| |||||||||||| |||||||||| || ||||||||||||||||||  |||||   | ||||| ||||    
T  40254521 agagcttggtctctccctaccaatcctttatcccaatccctgaat-cctttcttttcctctgcatcttatttataatatgaactc---cctatagcagtt 40254426  T
Q  279 acatagaagtttagtagacaga--cactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtat 376  Q
    |||||||||||||||||| | |   | |  |||||||| |||| |||||| | || ||||| |||||||||||||||| |||||||||||||||||||||    
T  40254425 acatagaagtttagtagagataacaattgatgcagacagcaattactgcacacaagtaacagttactaatttataatattattaaataaacaactagtat 40254326  T
Q  377 tatataacttcttcccttaggagtcctat 405  Q
    | |||| ||||||||||||||||||||||    
T  40254325 tctatagcttcttcccttaggagtcctat 40254297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 403
Target Start/End: Original strand, 2411061 - 2411378
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    ||||||||||||| ||||||||||||| | |||||||| ||||||||  |  ||| |||| |||| |||||||||| |||||||||||||| |||||||     
T  2411061 tgatagaaactgatatcaaaatataaactaatagtaat-attacaatcga--atcccaagaaatttgagagtcttgattctctcccctccaggaattcg- 2411156  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatc-ttatttataatactaactctctcatatagtagtt 278  Q
     || |||||||||||||||||||| ||||||  |||  | |||| ||  | |||| || |||| | || ||||||||||||||||   | ||||| ||||    
T  2411157 -agcttggtctctccctaccaatcctttatccaaataaccgaatgcccctattttcctctgcaactttgtttataatactaactc---cctatagaagtt 2411252  T
Q  279 acatagaagtttagtagacagaca-ctactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaaca----actag 373  Q
    ||||| |||||| | ||| | |||  ||||||||| | || | |||||| ||   ||| | |||||||||||||||| |||||||||||||    |||||    
T  2411253 acataaaagttttgcagata-acagttactgcagatagcagttactgcacat--gtaatagttactaatttataata-tattaaataaacaatttactag 2411348  T
Q  374 tattatataacttcttcccttaggagtcct 403  Q
    |||||||||||||||||| |||||||||||    
T  2411349 tattatataacttcttcctttaggagtcct 2411378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 21661287 - 21661182
Alignment:
Q  87 aactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttg 186  Q
    |||||| ||||||||||||| | |||||||  ||||||||||||  || |||| ||||||||||||||||||||||||||||||| ||||||| || |||    
T  21661287 aactgatatcaaaatataaactaatagtaag-attacaatatat--tcccaagaaattcgagagtcttggttctctcccctccaataattcgagagcttg 21661191  T
Q  187 gtctctccc 195  Q
    |||||||||    
T  21661190 gtctctccc 21661182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 5176600 - 5176665
Alignment:
Q  136 caaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccctaccaat 202  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| || |||||||||||| ||||||    
T  5176600 caaggaattcgagagtcttgggtctctccc-tccaagaattcgagagcttggtctctcccaaccaat 5176665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 36241366 - 36241424
Alignment:
Q  356 tattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaacag 414  Q
    ||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||||    
T  36241366 tattaaataaacaactaatattctataacttatgcccttaggagtcctatatctaacag 36241424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 561
Target Start/End: Complemental strand, 37264096 - 37263988
Alignment:
Q  452 tgaaataactttgtattgaatttaatgaaaaacacaatacaagagaaattgattgaatacaatgtaaattgtaaacttaagaaaccagtaggaagataga 551  Q
    ||||||||||||||||||| || | ||||  |||||||||||||||||||||| | ||||| || |||| |  ||| ||||||||  |||| ||||||||    
T  37264096 tgaaataactttgtattgagttcactgaattacacaatacaagagaaattgatgggatacagtgcaaatggacaac-taagaaacttgtagaaagataga 37263998  T
Q  552 agaagactta 561  Q
    ||||||||||    
T  37263997 agaagactta 37263988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 26246968 - 26247043
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggtt 158  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| ||||||||||||||||||    
T  26246968 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggtt 26247043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 168 - 414
Target Start/End: Original strand, 45638746 - 45638997
Alignment:
Q  168 ccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttat-----aatactaact 262  Q
    |||||||||||| || |||||||||||||||| | | |||||| |||||||||||| |||||||||| || ||||||||||||||     ||||||||||    
T  45638746 ccaagaattcgagagcttggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 45638845  T
Q  263 ctctcatatagtagttacatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaa 362  Q
    | ||| ||||| ||||||||||||||||||| |||||  ||||||||||||| |||| || ||| |||| ||||| ||||||||||||||||||||||||    
T  45638846 ccctcctatagcagttacatagaagtttagttgacagcaactactgcagacagcaattaccgcacataagtaacagttactaatttataatactattaaa 45638945  T
Q  363 taaacaactagtattatataacttcttcccttaggagtcctatatctaacag 414  Q
    ||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  45638946 taaacaactagtattctataacttctgcccttaggagtcatatatctaacag 45638997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 430 - 591
Target Start/End: Complemental strand, 49272817 - 49272656
Alignment:
Q  430 ttgatgaatgcagtgaaatagatgaaataactttgtattgaatttaatgaaaaacacaatacaagagaaattgattgaatacaatgtaaattgtaaactt 529  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||  |||||    
T  49272817 ttgatgaatgcagtgaaatagatgaaatagctttgcattgaattcaatgaaaaacacaatacaagagaaattgatcgaataaagtgtaaattgacaactt 49272718  T
Q  530 aagaaaccagtaggaagatagaagaagacttagtccaaagacttaagtcattaatcttaaag 591  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  49272717 aagaaactagtaggaagatagaagaagacttagtccaaaaacttaagtcattactctcaaag 49272656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 79 - 405
Target Start/End: Complemental strand, 11962244 - 11961941
Alignment:
Q  79 ttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcg 178  Q
    ||||||| |||||| ||||||||||||| | ||||| |  |||||||||||  ||| |||| ||||||||||||||||||||||||||||||||  ||||    
T  11962244 ttgataggaactgatatcaaaatataaactaatagttag-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagtgttcg 11962148  T
Q  179 aaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtt 278  Q
    | || ||||||| |||||||||||| |||| | |||| |||||||||||||||||| || ||||||||||||||||||||||     || |||||  |||    
T  11962147 agagcttggtctatccctaccaatcctttaccccaatgcctgaatacctttcttttcctctgcatcttatttataatactaa----gtcctatagctgtt 11962052  T
Q  279 acatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtatta 378  Q
    |||||||| ||||||||||||                |||| ||| || | || ||||| ||||| |||||||||| |||||||||||| |||| ||||     
T  11962051 acatagaaatttagtagacag----------------caattactacacacaagtaacagttacttatttataatattattaaataaactactattattc 11961968  T
Q  379 tataacttcttcccttaggagtcctat 405  Q
    ||||||| || ||||||||||||||||    
T  11961967 tataactgctgcccttaggagtcctat 11961941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 414 - 636
Target Start/End: Original strand, 52723825 - 52724053
Alignment:
Q  414 gtttagccctttataattgatgaatgcagtgaaata-----------gatgaaataactttgtattgaatttaatgaaaaacacaatacaagagaaattg 502  Q
    |||||||||||| ||||||||||||| |||||||||           |||||||||||||||||||||||| | |||||| || |||||||||||||| |    
T  52723825 gtttagccctttgtaattgatgaatgtagtgaaatacaaaacaattggatgaaataactttgtattgaattcattgaaaa-caaaatacaagagaaatcg 52723923  T
Q  503 attgaatacaatgtaaattgtaaacttaagaaaccagtaggaagatagaagaagacttagtccaaagacttaagtcattaatcttaaagagaatatcaag 602  Q
    || ||||| |||||||||||  |||||||  |||   ||  |||||||||||||| ||||| ||||||| ||| |||||| |||   ||||| || |||     
T  52723924 atcgaatagaatgtaaattgacaacttaatgaac--ttaaaaagatagaagaagatttagttcaaagacctaaatcattactct--cagagagtaccaaa 52724019  T
Q  603 gggagaaggagacttttcttcaattttcttcatg 636  Q
    | ||||||||||||||||||||||||||||||||    
T  52724020 gagagaaggagacttttcttcaattttcttcatg 52724053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 3567179 - 3567053
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    ||||||||||||| ||||||||||||  | |||||||| ||||||||| |  |||||||| ||||| |  ||||||||||||||||||||||||||||||    
T  3567179 tgatagaaactgagatcaaaatataacctaatagtaat-attacaataca--atctcaagaaattcaattgtcttggttctctcccctccaagaattcga 3567083  T
Q  180 aagtttggtctctccctaccaatcatttat 209  Q
     ||||||||||||||||||| ||| |||||    
T  3567082 tagtttggtctctccctacctatcctttat 3567053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 27869436 - 27869367
Alignment:
Q  134 ctcaaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccctaccaatc 203  Q
    |||||| |||||||||||||||  |||||||| ||||||||||| | || ||||||||||||||||||||    
T  27869436 ctcaagaaattcgagagtcttgcatctctcccttccaagaattcaagagcttggtctctccctaccaatc 27869367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 32992445 - 32992387
Alignment:
Q  136 caaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccc 195  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||| || || |||||||||    
T  32992445 caaggaattcgagagtcttgggtctct-ccctccaagaactcgagagctttgtctctccc 32992387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 54291731 - 54291698
Alignment:
Q  136 caaggaattcgagagtcttggttctctcccctcc 169  Q
    |||| |||||||||||||||||||||||||||||    
T  54291731 caagaaattcgagagtcttggttctctcccctcc 54291698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 55 - 414
Target Start/End: Complemental strand, 11314 - 10971
Alignment:
Q  55 ggatcagaattgctctgataccggttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtctt 154  Q
    ||||||||| |||| ||||||  |||||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| ||||||||||||||    
T  11314 ggatcagaactgctttgatacgagttgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtctt 11218  T
Q  155 ggttctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataa 254  Q
    ||||||||||| ||||||  ||||| || |||||||||||||||||||| |||||| ||||||||||||| |||||||||  | ||||||||||||||||    
T  11217 ggttctctcccttccaagttttcgagagcttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttatttataa 11118  T
Q  255 tactaactctctcatatagtagttacatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataata 354  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||                |||| |||||| |||||||||| |||||| |||||||||    
T  11117 tactaactctctcctatagcagttacatagaagtttagtagacag----------------caattactgcacataactaacagttactactttataata 11034  T
Q  355 ctattaaataaaca----actagtattatataacttcttcccttaggagtcctatatctaacag 414  Q
     |||||||||||||    |||| |||| ||||||| || ||||||||||||||||  |||||||    
T  11033 -tattaaataaacaatctactaatattctataactgctgcccttaggagtcctattactaacag 10971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 257
Target Start/End: Complemental strand, 12437 - 12263
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||| | ||||||||||||| | |||||||| |||||||||||  ||| |||| |||| |||||||||||||||||||||||||||| ||| |    
T  12437 tgataggaacttatatcaaaatataaactaatagtaat-attacaatata--atcccaagaaattagagagtcttggttctctcccctccaagagttcaa 12341  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatac 257  Q
     || |||||||||||||||| ||| |||||| ||||||||||||| ||||||||| || |||||||||||||||||||    
T  12340 gagcttggtctctccctacctatcctttatcccaatccctgaataactttcttttcctctgcatcttatttataatac 12263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 12208 - 12136
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctat 405  Q
    ||||| ||||| |||||||||| |||||||||||| |||| |||| ||||||| || ||||||||||||||||    
T  12208 taacagttacttatttataatattattaaataaactactattattctataactgctgcccttaggagtcctat 12136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 54 - 299
Target Start/End: Complemental strand, 6081440 - 6081202
Alignment:
Q  54 tggatcagaattgctctgataccggttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtct 153  Q
    |||||||||| |||||||||||| |||||||| |||||| ||||||||||||| | |||||||  ||||||||| |  ||| |||| |||||||||||||    
T  6081440 tggatcagaactgctctgataccagttgataggaactgatatcaaaatataaactaatagtaag-attacaataca--atcccaagaaattcgagagtct 6081344  T
Q  154 tggttctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttata 253  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||||| |||||| |||||||||||||||||||||||  | |||||||||||||||    
T  6081343 tggttctctcccctccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttata 6081244  T
Q  254 atactaactctctcatatagtagttacatagaagtttagtagacag 299  Q
    |||||||     || |||||  ||||||||||||||||||||||||    
T  6081243 atactaa----gtcctatagctgttacatagaagtttagtagacag 6081202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 80 - 299
Target Start/End: Complemental strand, 6082621 - 6082409
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  ||||||||| |  ||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  6082621 tgataggaactgatatcaaaatataaactaatagtaag-attacaataca--atcccaagaaattcgagagtcttggttctctcccctccaagtattcga 6082525  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||||||| |||||| |||||||||||||||||||||||  | |||||||||||||||||| |||     || |||||  ||||    
T  6082524 gagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataataataa----gtcctatagctgtta 6082429  T
Q  280 catagaagtttagtagacag 299  Q
    ||||||||||||||||||||    
T  6082428 catagaagtttagtagacag 6082409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 450 - 635
Target Start/End: Complemental strand, 39773496 - 39773311
Alignment:
Q  450 gatgaaataactttgtattgaatttaatgaaaaacacaatacaagagaaattgattgaatacaatgtaaattgtaaacttaagaaaccagtaggaagata 549  Q
    |||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||| |||||||||||  || ||||  ||| ||||| ||||||    
T  39773496 gatgaaataactttgtattgaattcactaaaaaatacaatacaagagaaattgattgaatagaatgtaaattgacaatttaatgaactagtagaaagata 39773397  T
Q  550 gaagaagacttagtccaaagacttaagtcattaatcttaaagagaatatcaaggggagaaggagacttttcttcaattttcttcat 635  Q
    ||||||||||||||| |||||| |||| ||||| ||| || |||| || ||| ||||||| |||||||||||||||| ||||||||    
T  39773396 gaagaagacttagtctaaagacctaagccattactctcaaggagagtaccaaagggagaaagagacttttcttcaatattcttcat 39773311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 17901274 - 17901154
Alignment:
Q  80 tgatagaaactgacatcaaaa--tataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattc 177  Q
    ||||||||||||| |||||||  |||||||| |||||||| ||||||||| ||  || |||| ||||||||||||||||| |||||||||||||||||||    
T  17901274 tgatagaaactgatatcaaaacatataaattaatagtaat-attacaatagat--tcccaagaaattcgagagtcttggtactctcccctccaagaattc 17901178  T
Q  178 gaaagtttggtctctccctaccaa 201  Q
    || || ||||||||||||| ||||    
T  17901177 gagagcttggtctctccctcccaa 17901154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 609
Target Start/End: Original strand, 29346786 - 29346851
Alignment:
Q  544 aagatagaagaagacttagtccaaagacttaagtcattaatcttaaagagaatatcaaggggagaa 609  Q
    |||||||||||||||||||||||||||||||||||||||  || ||||||| || ||| |||||||    
T  29346786 aagatagaagaagacttagtccaaagacttaagtcattaccctcaaagagagtaccaaagggagaa 29346851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 27021232 - 27021157
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaa----ctagtattatataacttcttcccttaggagtcctat 405  Q
    ||||||||||||||||||| || ||||||||||||||    ||| ||||||||||||||| ||||||||||||||||    
T  27021232 taacaattactaatttatagta-tattaaataaacaatttactaatattatataacttctgcccttaggagtcctat 27021157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 6081184 - 6081112
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctat 405  Q
    ||||| ||||| |||||||||| |||||||||||| |||| ||||  |||||| || ||||||||||||||||    
T  6081184 taacagttacttatttataatattattaaataaactactattattccataactgctgcccttaggagtcctat 6081112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 6082391 - 6082319
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctat 405  Q
    ||||| ||||| |||||||||| |||||||||||| |||| ||||  |||||| || ||||||||||||||||    
T  6082391 taacagttacttatttataatattattaaataaactactattattccataactgctgcccttaggagtcctat 6082319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 17166131 - 17166187
Alignment:
Q  356 tattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaac 412  Q
    ||||||||||||||||| |||| |||||||| |  ||||||||||||||||||||||    
T  17166131 tattaaataaacaactaatattctataacttatggccttaggagtcctatatctaac 17166187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 582
Target Start/End: Complemental strand, 42863819 - 42863781
Alignment:
Q  544 aagatagaagaagacttagtccaaagacttaagtcatta 582  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  42863819 aagatagaagaagacctagtcctaagacttaagtcatta 42863781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 27021472 - 27021363
Alignment:
Q  83 tagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcgaaag 182  Q
    |||||||||| |||||||||| | || |||||||| ||||||||| |  ||| |||| ||||||||  || |||||| |||| || ||||||||||| ||    
T  27021472 tagaaactgatatcaaaatattacttaatagtaat-attacaataga--atcccaagaaattcgag--tcctggttccctcctcttcaagaattcgagag 27021378  T
Q  183 tttggtctctcccta 197  Q
     ||| ||||||||||    
T  27021377 cttgatctctcccta 27021363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 582
Target Start/End: Original strand, 29367312 - 29367348
Alignment:
Q  546 gatagaagaagacttagtccaaagacttaagtcatta 582  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  29367312 gatagaagaagactaagtcctaagacttaagtcatta 29367348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 58 - 405
Target Start/End: Original strand, 18132967 - 18133290
Alignment:
Q  58 tcagaattgctctgataccggttgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggt 157  Q
    |||||| |||||||||||| || ||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||||||    
T  18132967 tcagaactgctctgataccagt-gataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggt 18133062  T
Q  158 tctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatac 257  Q
    |||||||||||||||||||||| || |||||||||||||||| ||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  18133063 tctctcccctccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatac 18133162  T
Q  258 taactctctcatatagtagttacatagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatacta 357  Q
    |||     || |||||  ||||||||||||||||||||||||                |||| ||| || | || ||||| ||||| |||||||||| ||    
T  18133163 taa----gtcctatagctgttacatagaagtttagtagacag----------------caattactacacacaagtaacagttacttatttataatatta 18133242  T
Q  358 ttaaataaacaactagtattatataacttcttcccttaggagtcctat 405  Q
    |||||||||| |||| |||| ||||||| || ||||||||||||||||    
T  18133243 ttaaataaactactattattctataactgctgcccttaggagtcctat 18133290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 80 - 415
Target Start/End: Complemental strand, 21535921 - 21535609
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  21535921 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagaattcga 21535825  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||| ||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||     || |||||  ||||    
T  21535824 gagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----ttcctatagctgtta 21535729  T
Q  280 catagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattat 379  Q
    ||||||||||||||||||||                |||| ||| || | || ||||| ||||| |||||||||| |||||||||||| |||| |||| |    
T  21535728 catagaagtttagtagacag----------------caattactacatacaagtaacagttacttatttataatattattaaataaactactattattct 21535645  T
Q  380 ataacttcttcccttaggagtcctatatctaacagt 415  Q
    |||||| || ||||||||||||||||  ||||||||    
T  21535644 ataactgctgcccttaggagtcctattactaacagt 21535609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 80 - 405
Target Start/End: Original strand, 18131782 - 18132084
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| ||||||||||||||||||||||||| |||||| ||||||    
T  18131782 tgataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggttctctcccttccaagtattcga 18131878  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||     || |||||  ||||    
T  18131879 gagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttataatactaa----gtcctatagctgtta 18131974  T
Q  280 catagaagtttagtagacagacactactgcagacaacaatcactgcaaataactaacaattactaatttataatactattaaataaacaactagtattat 379  Q
    ||||||||||||||||||||                |||| ||| || | || ||||| ||||| |||||||||| |||||||||||| |||| |||| |    
T  18131975 catagaagtttagtagacag----------------caattactacacacaagtaacagttacttatttataatattattaaataaactactattattct 18132058  T
Q  380 ataacttcttcccttaggagtcctat 405  Q
    |||||| || ||||||||||||||||    
T  18132059 ataactgctgcccttaggagtcctat 18132084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 80 - 260
Target Start/End: Original strand, 21395591 - 21395768
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    ||||||||||||| ||||||||||||| | | |||||  |||| |  |||||||| |||| ||||| |||||||||||| ||||||||||||||||||||    
T  21395591 tgatagaaactgatatcaaaatataaactaacagtaa-gattata--atataatcccaagaaattcaagagtcttggttgtctcccctccaagaattcga 21395687  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaa 260  Q
     || |||||||||||||||||||| |||||| |||||||||||| |||||||||| || ||||||||||||||||||||||    
T  21395688 gagcttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttataatactaa 21395768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 7033339 - 7033443
Alignment:
Q  82 atagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcgaaa 181  Q
    |||| |||||| ||||||||||||| | |||||||  |||||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  7033339 ataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattcgagagtcttggttctctcccctccaagaattcgaaa 7033435  T
Q  182 gtttggtc 189  Q
    | ||||||    
T  7033436 gcttggtc 7033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 4303153 - 4303035
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    ||||||||||||  ||||||||  ||||| ||| |||| || |||||| ||  || |||| ||||| |||||||||||||||||||||||||||||||||    
T  4303153 tgatagaaactggtatcaaaatccaaattaatattaataat-acaatagat--tcccaagaaattctagagtcttggttctctcccctccaagaattcga 4303057  T
Q  180 aagtttggtctctccctaccaa 201  Q
     || ||||||||||||| ||||    
T  4303056 gagcttggtctctcccttccaa 4303035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 7033443 - 7033525
Alignment:
Q  212 caatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagttacatagaagtttagtagaca 298  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||     || |||||  |||||||||||||||||||||||    
T  7033443 caatccctgaatacctttcttttcctctgcatcttatttataatactaa----gtcctatagctgttacatagaagtttagtagaca 7033525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 16189780 - 16189671
Alignment:
Q  80 tgatagaaactgacatcaaaa--tataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattc 177  Q
    ||||||||||||| |||||||  |||||||| |||||||| ||||||||| |  ||| || |||| | |||||| |||||||||||||||||||||||||    
T  16189780 tgatagaaactgatatcaaaacatataaattaatagtaat-attacaataga--atcccatggaaattgagagtgttggttctctcccctccaagaattc 16189684  T
Q  178 gaaagtttggtct 190  Q
    || || |||||||    
T  16189683 gagagcttggtct 16189671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 6033315 - 6033388
Alignment:
Q  493 agagaaattgattgaatacaatgtaaa-ttgtaaacttaagaaaccagtaggaagatagaagaagacttagtcc 565  Q
    |||||||||||| |||||||||| ||| |||  |||||||||||   |||| ||||||||||||||||||||||    
T  6033315 agagaaattgatggaatacaatgcaaaattgacaacttaagaaaattgtagaaagatagaagaagacttagtcc 6033388  T

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Target: scaffold0011 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 80 - 299
Target Start/End: Original strand, 205589 - 205801
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  ||||||||| |  ||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  205589 tgataggaactgatatcaaaatataaactaatagtaag-attacaataca--atcccaagaaattcgagagtcttggttctctcccctccaagtattcga 205685  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaactctctcatatagtagtta 279  Q
     || |||||||||||||||||||| |||||| ||||||||||||| |||||||||  | ||||||||||||||||||||||     || |||||  ||||    
T  205686 gagcttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttatttataatactaa----gtcctatagctgtta 205781  T
Q  280 catagaagtttagtagacag 299  Q
    ||||||||||||||||||||    
T  205782 catagaagtttagtagacag 205801  T

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Target: scaffold0011; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 80 - 260
Target Start/End: Original strand, 211666 - 211843
Alignment:
Q  80 tgatagaaactgacatcaaaatataaatttatagtaattattacaatatataatctcaaggaattcgagagtcttggttctctcccctccaagaattcga 179  Q
    |||||| |||||| ||||||||||||| | |||||||  ||||||||| |  ||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  211666 tgataggaactgatatcaaaatataaactaatagtaag-attacaataca--atcccaagaaattcgagagtcttggttctctcccctccaagtattcga 211762  T
Q  180 aagtttggtctctccctaccaatcatttatcgcaatccctgaatacctttctttttctttgcatcttatttataatactaa 260  Q
     || |||||||||||||||||||| |||||| |||||||||||||||||||||||  | ||||||||||||||||||||||    
T  211763 gagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttataatactaa 211843  T

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Target: scaffold0011; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 205819 - 205901
Alignment:
Q  333 taacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctatatctaacagt 415  Q
    ||||| ||||| |||||||||| |||||||||||| |||| |||| ||||||| || ||| ||||||||||||  ||||||||    
T  205819 taacagttacttatttataatattattaaataaactactattattctataactgctgcccgtaggagtcctattactaacagt 205901  T

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Target: scaffold0018 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 127 - 405
Target Start/End: Original strand, 177907 - 178165
Alignment:
Q  127 atataatctcaaggaattcgagagtcttggttctctcccctccaagaattcgaaagtttggtctctccctaccaatcatttatcgcaatccctgaatacc 226  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||| |||| | |||||||||||||||    
T  177907 atataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccctaccaatcctttaccccaatccctgaatacc 178006  T
Q  227 tttctttttctttgcatcttatttataatactaactctctcatatagtagttacatagaagtttagtagacagacactactgcagacaacaatcactgca 326  Q
    |||||||| || ||||||||||||||||||||||     || |||||  ||||||||||| ||||||||||||                |||| ||| ||    
T  178007 tttcttttcctctgcatcttatttataatactaa----gtcctatagctgttacatagaaatttagtagacag----------------caattactaca 178086  T
Q  327 aataactaacaattactaatttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctat 405  Q
     | || ||||| ||||| |||||||||| |||||||||||| |||| |||| ||||||| || ||||||||||||||||    
T  178087 cacaagtaacagttacttatttataatattattaaataaactactattattctataactgctgcccttaggagtcctat 178165  T

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Target: scaffold0018; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 177843 - 177784
Alignment:
Q  346 tttataatactattaaataaacaactagtattatataacttcttcccttaggagtcctat 405  Q
    ||||||||| |||||||||||| |||| |||| ||||||| || ||||||||||||||||    
T  177843 tttataatattattaaataaactactattattctataactgctgcccttaggagtcctat 177784  T

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Target: scaffold0018; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 177831 - 177887
Alignment:
Q  349 ataatactattaaataaacaactagtattatataacttcttcccttaggagtcctat 405  Q
    |||||| ||| |||||||| |||| |||| ||||||| || ||||||||||||||||    
T  177831 ataatattataaaataaactactattattctataactgctgcccttaggagtcctat 177887  T

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Target: scaffold0274 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 450 - 636
Target Start/End: Original strand, 5230 - 5416
Alignment:
Q  450 gatgaaataactttgtattgaatttaatgaaaaacacaatacaagagaaattgattgaatacaatgtaaattgtaaacttaagaaaccagtaggaagata 549  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||||||| || |||| |||||||||||  |||||||  ||| ||||| ||||||    
T  5230 gatgaaataactttgtattgaattcact-aaaaacacaatacaagagaaattgtttaaatagaatgtaaattgacaacttaatgaactagtagaaagata 5328  T
Q  550 gaagaagac-ttagtccaaagacttaagtcattaatcttaaagagaatatcaaggggagaaggagacttttcttcaattttcttcatg 636  Q
    ||||| ||| |||||| |||||| |||| ||||| ||| || |||| || ||| |||||| |||||||||||||||||  ||||||||    
T  5329 gaagacgactttagtctaaagacctaagccattactctcaaggagagtaccaaagggagatggagacttttcttcaataatcttcatg 5416  T

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Target: scaffold0271 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 450 - 636
Target Start/End: Complemental strand, 4060 - 3874
Alignment:
Q  450 gatgaaataactttgtattgaatttaatgaaaaacacaatacaagagaaattgattgaatacaatgtaaattgtaaacttaagaaaccagtaggaagata 549  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||||||| || |||| |||||||||||  |||||||  ||| ||||| ||||||    
T  4060 gatgaaataactttgtattgaattcact-aaaaacacaatacaagagaaattgtttaaatagaatgtaaattgacaacttaatgaactagtagaaagata 3962  T
Q  550 gaagaagac-ttagtccaaagacttaagtcattaatcttaaagagaatatcaaggggagaaggagacttttcttcaattttcttcatg 636  Q
    ||||| ||| |||||| |||||| |||| ||||| ||| || |||| || ||| |||||| |||||||||||||||||  ||||||||    
T  3961 gaagacgactttagtctaaagacctaagccattactctcaaggagagtaccaaagggagatggagacttttcttcaataatcttcatg 3874  T

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