View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15237_low_1 (Length: 973)
Name: NF15237_low_1
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 2 - 487
Target Start/End: Complemental strand, 39129053 - 39128564
Alignment:
| Q |
2 |
caccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgtgnnnnnnnnnnnnnnnn |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39129053 |
caccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgtgaaaaaaaaccaaaaaa |
39128954 |
T |
|
| Q |
102 |
caataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacaataaacaccaagaaaatagacatttaaaaatctaatcagg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39128953 |
caataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacgataaacaccaagaaaatagacatttaaaaatctaatcagg |
39128854 |
T |
|
| Q |
202 |
aaaaacaaagttaagtgaaaacagaatccaccgctctaacaacatatatacattgccaacagataaaagaaaataagaataaacataaacacctagt--- |
298 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39128853 |
aaaaacaaaggtaagtgaaaacagaatccaccgctctaacaacatatatacattgccaacagataaaagaaaataagaataaacataaacacctggtagt |
39128754 |
T |
|
| Q |
299 |
-agtaacaatgttgataagtttatttggtggtttcaaattgaacatagttgaaacaagcaaaacccttaaaatcaatttctcaactatggcattcactcg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39128753 |
aagtaacaatgttgataagtttatttggtggtttcaaattgaacatagttgaaacaagcaaaacccttaaaatcaatttctcaactatggcattcactca |
39128654 |
T |
|
| Q |
398 |
gaccacacaaaaatgaaaccttgttaaggaaatttcaaacaaaatgaaacataaacacagtgatactattgtattgacacaaagcataaa |
487 |
Q |
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| T |
39128653 |
gaccacacaaaaatgaaaccttgttaaggaaatttcaaacaaaatcaaacataaacacagtgatactattgtgttgacacaaagcataaa |
39128564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 733 - 956
Target Start/End: Complemental strand, 39128209 - 39127972
Alignment:
| Q |
733 |
cctggtaacaatgttgtttggtggttacaaaaatgaagatacat-agttgaaac---------aaacattaaacattaacaaaatttattnnnnnnnn-- |
820 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||||||| |
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| T |
39128209 |
cctggtaacaatgttgtttggtggttacaaaaatgaagatacattaactgtaaccaaaaaaaaaaacattaaacattaacaaaatttattaaaaaaaaaa |
39128110 |
T |
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| Q |
821 |
--gaaatgttgttcttacttacagttacaaaatatgatgatgatgaaaaagaaatgtaacagaaaggggaaggtgaaaaggaaagaagttggttctgctg |
918 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39128109 |
aagaaatgttgttcttacttacagttagaaaatatgatgatgatgaaaaagaaatgtaacagaaaggggaaggtgaaaaggaaagaagttggttctgctg |
39128010 |
T |
|
| Q |
919 |
agaagaaatggcgtagcagtggcagcgtgggaggaagg |
956 |
Q |
| |
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| T |
39128009 |
agaagaaatggcttagtagtggcagcgtgggaggaagg |
39127972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 573 - 680
Target Start/End: Complemental strand, 39128358 - 39128251
Alignment:
| Q |
573 |
tgtggttcttttagctagaatacatgatgataatgttgaaaagaagaagctttgtttaggaaatttcaaaaaacaaacccaaatactaaacacctagtga |
672 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39128358 |
tgtgattcttttagctagaatacattatgataatgttgaaaagaagaagctttgtttaggaaatttcaaaaaacaaacccaaatactaaacacctagtga |
39128259 |
T |
|
| Q |
673 |
ccatgttt |
680 |
Q |
| |
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|||||||| |
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|
| T |
39128258 |
ccatgttt |
39128251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 438 - 508
Target Start/End: Complemental strand, 39128493 - 39128423
Alignment:
| Q |
438 |
aaaatgaaacataaacacagtgatactattgtattgacacaaagcataaaatggttttgaaaccctctcac |
508 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39128493 |
aaaatcaaacataaacaaagtgatactattgtattgacacagagcataaaatggttttgaaaccctctcac |
39128423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 39496033 - 39496094
Alignment:
| Q |
2 |
caccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagcct |
63 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
39496033 |
caccaacaccacagaactttgacttatcagaacccttaaaagccatttttcaacggtagcct |
39496094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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