View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15237_low_10 (Length: 434)

Name: NF15237_low_10
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15237_low_10
NF15237_low_10
[»] chr2 (4 HSPs)
chr2 (152-434)||(17124644-17124927)
chr2 (10-88)||(17124991-17125069)
chr2 (388-429)||(18583685-18583726)
chr2 (389-426)||(42989912-42989949)
[»] chr1 (2 HSPs)
chr1 (168-249)||(5229913-5229994)
chr1 (380-432)||(5229799-5229851)
[»] chr4 (1 HSPs)
chr4 (173-251)||(52550327-52550405)
[»] chr8 (1 HSPs)
chr8 (388-425)||(5451002-5451039)
[»] chr5 (1 HSPs)
chr5 (389-426)||(8142161-8142198)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 152 - 434
Target Start/End: Complemental strand, 17124927 - 17124644
Alignment:
Q  152 aagcaccaaacagaaaa-aacaccaaccttgaacggctcattgtctgttctgaaagcaacacctggtacatactttagccaaacaggaaatcccctgcat 250  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17124927 aagcaccaaacagaaaataacaccaaccttgaacggctcattgtctgttctgaaagcaacacctggtacatactttagccaaacaggaaatcccctgcat 17124828  T
Q  251 accaaacagaacatgttagctttgagtaattgctaagaaattgttaataatatttacaccgtcagtgcaaataatatttacaccgtcaatcaactataac 350  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  17124827 accaaacagaacttgttagctttgagtaattgctaagaaattgttaataatatttacaccgtcagtttaaataatatttacaccgtcaatcaattataac 17124728  T
Q  351 cgtaaattatgtcnnnnnnntttaaactctaaaatccttacccaaaattccattcagcacaaacatagggaccaatacgcaaat 434  Q
     ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17124727 tgtaaattatgtcaaaaaaatttaaactctaaaatccttacccaaaattccattcagcacaaacatagggaccaatacgcaaat 17124644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 17125069 - 17124991
Alignment:
Q  10 ataatactgacaatcttggtagtgaatttttgcatagccgcctaacatacatcatgacaataattaggacggttgttag 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17125069 ataatactgacaatcttggtagtgaatttttgcatagccgcctaacatacatcatgacaataattaggacggttgttag 17124991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 18583726 - 18583685
Alignment:
Q  388 ttacccaaaattccattcagcacaaacatagggaccaatacg 429  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  18583726 ttacccataattccattcagcacaaacataggggccaatacg 18583685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 42989912 - 42989949
Alignment:
Q  389 tacccaaaattccattcagcacaaacatagggaccaat 426  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  42989912 tacccaaaattccattcagcacaaacataaggaccaat 42989949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 5229994 - 5229913
Alignment:
Q  168 aaacaccaaccttgaacggctcattgtctgttctgaaagcaacacctggtacatactttagccaaacaggaaatcccctgca 249  Q
    |||| |||||||| || ||||||||||||||||||||||| |  || || |||||||| ||||||||||||||||| |||||    
T  5229994 aaactccaaccttaaatggctcattgtctgttctgaaagccatcccaggaacatacttgagccaaacaggaaatcctctgca 5229913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 5229851 - 5229799
Alignment:
Q  380 taaaatccttacccaaaattccattcagcacaaacatagggaccaatacgcaa 432  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||    
T  5229851 taaaatcattacccataattccattcagcacaaacgtagggaccaatacgcaa 5229799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 52550327 - 52550405
Alignment:
Q  173 ccaaccttgaacggctcattgtctgttctgaaagcaacacctggtacatactttagccaaacaggaaatcccctgcata 251  Q
    |||||||| || ||||  |||||||||||||| ||||  || || |||||||| |||||||| |||||||| |||||||    
T  52550327 ccaaccttaaaaggctggttgtctgttctgaatgcaatgcccggaacatacttgagccaaactggaaatccactgcata 52550405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 5451039 - 5451002
Alignment:
Q  388 ttacccaaaattccattcagcacaaacatagggaccaa 425  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  5451039 ttacccaaaattccattcagcacaagcataaggaccaa 5451002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 8142161 - 8142198
Alignment:
Q  389 tacccaaaattccattcagcacaaacatagggaccaat 426  Q
    ||||||||||||||||||||||||||||| || |||||    
T  8142161 tacccaaaattccattcagcacaaacataaggtccaat 8142198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University