View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15237_low_11 (Length: 398)
Name: NF15237_low_11
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 11848971 - 11848584
Alignment:
| Q |
1 |
caaagcattaacaagtggactacatggttgaccaacaaccttagtacaaaagctattaatccctttatccatatcattatcaaccttaacatcatcttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848971 |
caaagcattaacaagtggactacatggttgaccaacaaccttagtacaaaagctattaatccctttatccatatcattatcaaccttaacatcatcttta |
11848872 |
T |
|
| Q |
101 |
aacttaggaggtgacccttgaagacgattgttcgtcaaagccacagctttcaaactttgaagcgaaattaaagactgcggaacaacaccggttaactgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848871 |
aacttaggaggtgacccttgaagacgattgttcgtcaaagccacagctttcaaactttgaagcgaaattaaagactgcggaacaacaccggttaactgat |
11848772 |
T |
|
| Q |
201 |
tatccctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccagtaaaagcattaccttgaacccaaattactttcaacgatgt |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
11848771 |
tatctctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccagtaaaagcattactttgaacccaaattactttcaacgacgt |
11848672 |
T |
|
| Q |
301 |
catattttgcaaaacagaaagtgtaccattgagtttattaccattttgattattcacccaaaggttctctatagaactaccagataaa |
388 |
Q |
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| T |
11848671 |
catattttgcaaaacagaaagtgtaccattgagtttattaccattttgattattcacccaaaggttctctatagaactaccagataaa |
11848584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 11835584 - 11835198
Alignment:
| Q |
5 |
gcattaacaagtggactacatggttgaccaacaaccttagtacaaaagctattaatccctttatccatatcattatcaaccttaacatcatctttaaact |
104 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| || || ||||| |
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| T |
11835584 |
gcattaacaaccggactacatggttgaccaacaaccttagtacaaaagctattaatccctctatcaatatcattatcaacacgaacactattttgaaact |
11835485 |
T |
|
| Q |
105 |
taggaggtgacccttgaagacgattgttcgtcaaagccacagctttcaaactttgaagcgaaattaaagactgcggaacaacaccggttaactgattatc |
204 |
Q |
| |
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| ||| ||||||||||||| |||||| |||||| ||| || | ||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
11835484 |
tcggaactgacccttgaagataattgtttgtcaaattaacaactgttaaactttgaagcgaagttaaagacggtggaacaacaccggttaactgattatc |
11835385 |
T |
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| Q |
205 |
cctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccagtaaaagcattaccttgaacccaaattactttcaacgatgtcata |
304 |
Q |
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| T |
11835384 |
tctcaaactaacatcaaacaattgatcatgattcgataaatcaggtattggaccagtaaacgaattaccatgaacccaaatttgtttcaacgatgtcata |
11835285 |
T |
|
| Q |
305 |
ttttgcaaaacagaaagtgtaccattgagtttattacca---ttttgattattcacccaaaggttctctatagaactaccagataaa |
388 |
Q |
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| T |
11835284 |
ttttgcaaaacagaaagtgtgccattgagtttattattactcttttgaccatttacccaaagattcaatatagaactaccagataaa |
11835198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 11858176 - 11858566
Alignment:
| Q |
1 |
caaagcattaacaagtggactacatggttgaccaacaaccttagtacaaaagctattaatccctttatccatatcattatcaaccttaacatcatcttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| | ||||| |||| |||||||||||||| |||| || || | |
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| T |
11858176 |
caaagcattaacaagtggactacatggttgaccaatagccttagtgcaaaagctatgagtccctctatcaatatcattatcaacacgaacacgattttga |
11858275 |
T |
|
| Q |
101 |
aacttaggaggtgacccttgaagacgattgttcgtcaaagccacagctttcaaactttgaagcgaaattaaagactgcggaacaacaccggttaactgat |
200 |
Q |
| |
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||||||||| |||||||||||||| |||||| |||||| ||| || | ||||||||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
11858276 |
aacttaggaagtgacccttgaagataattgtttgtcaaattaacaactgttaaactttgaagcgaagttaaagacggtggaacaacaccggttaactgat |
11858375 |
T |
|
| Q |
201 |
tatccctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccagtaaaagcattaccttgaacccaaattactttcaacgatgt |
300 |
Q |
| |
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|||| || |||||||| ||| ||||||||||||||||||| ||||| ||||| |||||||||| | |||||| || ||||||||| |||||| ||||| |
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| T |
11858376 |
tatctctcaaactaacatcaaacaattgatcatgatttgataaatcaggtatacgaccagtaaacgaattaccatgtacccaaatttgtttcaatgatgt |
11858475 |
T |
|
| Q |
301 |
catattttgcaaaacagaaagtgtaccattgagtttatta---ccattttgattattcacccaaaggttctctatagaactaccagataaa |
388 |
Q |
| |
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| T |
11858476 |
caaattttgcaaaacagaaagtgtgccattgagtctattaatactactttgaccatttacccaaagtttctctatagaactaccagataaa |
11858566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 339
Target Start/End: Original strand, 44798019 - 44798179
Alignment:
| Q |
179 |
ggaacaacaccggttaactgattatccctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccagtaaaagcattaccttgaa |
278 |
Q |
| |
|
||||||||||| || ||||| |||||||| ||| | || ||||| | ||| | | | | ||| ||||| ||||| ||||| ||||| | |||| | | || |
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| T |
44798019 |
ggaacaacaccagtcaactggttatcccttaaattcacatcagatagttggttaagctgtgataaatcgggtataggacctgtaaatgaattatcgttaa |
44798118 |
T |
|
| Q |
279 |
cccaaattactttcaacgatgtcatattttgcaaaacagaaagtgtaccattgagtttatt |
339 |
Q |
| |
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|||| ||| |||||| |||||||| ||||| || ||| ||| ||||||||||||||||| |
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| T |
44798119 |
cccatatttgtttcaaagatgtcatgttttgtaacacaataagggtaccattgagtttatt |
44798179 |
T |
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