View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15237_low_19 (Length: 289)
Name: NF15237_low_19
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_low_19 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 38012659 - 38012373
Alignment:
| Q |
1 |
caacataattaaacagttgagtcaggaaaaagccaaattaaagcagtttggtagaagtggcatgccttaaggagtggggttgagaaaactaattaagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38012659 |
caacataattaaacagttgagtcaggaaaaagccaaattaaagcagtttggtagaagtggcatgccttaaggagtggggttgagaaaactaattaagcaa |
38012560 |
T |
|
| Q |
101 |
atgaaagaaagaaaaggatcaaatcaaattattttgatnnnnnnnnnnnncatatttaaaaaatagggagcgggaataatgggggtcttattttccagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38012559 |
atgaaagaaagaaaaggatcaaatcaaattattttgat--aaaaaaaaaacatatttaaaaaatagggagcgggaataatgggggtcttattttccagct |
38012462 |
T |
|
| Q |
201 |
tatatacatatatgaatggaaaagagagtagagtgatgtaaaagggtaggtacctgaggcaaggtcagcaacacagaggtcttgaagat |
289 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38012461 |
tatatacatatatgaatggaaaagagggtagagtgatgtaaaagggtaggtacctgaggcaaggtcagcaacacagaggtcttgaagat |
38012373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 45647260 - 45647304
Alignment:
| Q |
245 |
ggtaggtacctgaggcaaggtcagcaacacagaggtcttgaagat |
289 |
Q |
| |
|
|||| ||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
45647260 |
ggtacgtaccagaagcaaggtctgcaacacagaggtcttgaagat |
45647304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University