View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15237_low_21 (Length: 273)

Name: NF15237_low_21
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15237_low_21
NF15237_low_21
[»] chr3 (4 HSPs)
chr3 (1-254)||(43946116-43946369)
chr3 (23-251)||(40924045-40924274)
chr3 (23-251)||(2734999-2735228)
chr3 (103-248)||(22511154-22511299)
[»] chr2 (2 HSPs)
chr2 (23-251)||(5087097-5087326)
chr2 (23-248)||(43523740-43523966)
[»] scaffold0005 (1 HSPs)
scaffold0005 (23-251)||(40870-41099)
[»] chr1 (3 HSPs)
chr1 (19-251)||(11053944-11054175)
chr1 (23-251)||(27129649-27129876)
chr1 (23-251)||(25535641-25535870)
[»] chr4 (2 HSPs)
chr4 (23-251)||(14798629-14798858)
chr4 (115-251)||(18839197-18839333)
[»] chr7 (2 HSPs)
chr7 (23-251)||(31420368-31420597)
chr7 (23-248)||(41595133-41595359)
[»] chr8 (2 HSPs)
chr8 (31-251)||(33362008-33362229)
chr8 (89-186)||(42472978-42473075)
[»] chr5 (3 HSPs)
chr5 (23-251)||(22271809-22272037)
chr5 (23-248)||(23122480-23122706)
chr5 (23-248)||(14007984-14008210)
[»] chr6 (2 HSPs)
chr6 (23-251)||(9303251-9303475)
chr6 (23-114)||(95808-95900)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 43946369 - 43946116
Alignment:
Q  1 aatttaaactacataatatataaaaccagctttattaacaaatcttaacacaaagtcagttgtttattttttgaatcatcataagcttcatcaacaacgc 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||    
T  43946369 aatttaaactacataatatataaaaccagctttatcaacaaatcttaacacaaagtcatttgttcattttttgactcatcataagtttcatcaacaacgc 43946270  T
Q  101 tgcaaaatttagaatcaccaattttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatattt 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  43946269 tgcaaaatttagaatcaccaattttttcacgaatatattttctaaccctattgaaaagattttgcaagagctctttttgaatttgatgtgaagtatattt 43946170  T
Q  201 atatttttctgaagcatttttcaatacaacttttacaacttcatcattgtactg 254  Q
     ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  43946169 gtatttttctgaagcatttttcaacataacttttacaacttcatcattgtactg 43946116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 40924274 - 40924045
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    ||||||||||||| |||||| |||||||||| || || |||||  |||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||    
T  40924274 aaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacaagcttcatcaacgacgatgcaaaatttagaatcaccaa 40924175  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    ||| |||||||||||||||||| |||||| | |||||||||||||| | ||||||||| ||||||||||||||||||||  ||||||||  |||||||||    
T  40924174 tttcttcacgaatatgttttctcaccctactagaaagaatttgcaatatctctttttggatttgatgtgaagtatatttgcatttttctagagcattttt 40924075  T
Q  222 caatacaacttttacaacttcatcattgta 251  Q
    ||| ||||||||| ||||||||||||||||    
T  40924074 caacacaacttttgcaacttcatcattgta 40924045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 2735228 - 2734999
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    ||||||||||||| |||||| |||||||||| || || |||||| |||||||| ||||||  |||||||||||| ||| | |||||||||||||||||||    
T  2735228 aaaccagctttatcaacaaaccttaacacaagagccatttgtttcttttttgactcatcacgagcttcatcaacgacgatacaaaatttagaatcaccaa 2735129  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    ||| |||||||||||||||||| |||||| | |||||||||||||| | ||||||||| ||||||||||||||||| ||  ||||||||| |||||||||    
T  2735128 tttcttcacgaatatgttttctcaccctactagaaagaatttgcaatatctctttttggatttgatgtgaagtataattgcatttttctggagcattttt 2735029  T
Q  222 caatacaacttttacaacttcatcattgta 251  Q
    ||| ||||||||| ||||||||||||||||    
T  2735028 caacacaacttttgcaacttcatcattgta 2734999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 248
Target Start/End: Original strand, 22511154 - 22511299
Alignment:
Q  103 caaaatttagaatcaccaattttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttat 202  Q
    ||||| || |||||||||||||  |||| |||||||||| | || ||| | |||||||||  ||||||||||||||||| ||||||  ||||||||||      
T  22511154 caaaacttcgaatcaccaatttcctcacaaatatgttttttcactctactagaaagaattgccaagagctctttttgaacttgatggcaagtatattttc 22511253  T
Q  203 atttttctgaagcatttttcaatacaacttttacaacttcatcatt 248  Q
      || | || |||||| ||||| ||||||| | |||||||||||||    
T  22511254 cattatttggagcattattcaacacaacttgtgcaacttcatcatt 22511299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 5087326 - 5087097
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    ||||||||||||| ||||||||||||||||| || || |||||  |||||||| ||||||  |||||||||||||||| |||||||||||||||||||||    
T  5087326 aaaccagctttatcaacaaatcttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacaacgatgcaaaatttagaatcaccaa 5087227  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    ||| |||||||||||||||||  |||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||| ||||||||     
T  5087226 tttcttcacgaatatgttttcccaccctactagaaagaatttgcaaaagctctttttgaatttgatgtgaagtatacttgcatttttctggagcattttc 5087127  T
Q  222 caatacaacttttacaacttcatcattgta 251  Q
    ||| ||||||||| ||||||||||||||||    
T  5087126 caacacaacttttgcaacttcatcattgta 5087097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 43523966 - 43523740
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    |||||| |||||| ||||||||||||||||| || || |||||  |||| ||| |||||   ||||||||| |||| | | ||||| || ||||||||||    
T  43523966 aaaccatctttatcaacaaatcttaacacaagagccatttgttccttttgtgactcatcgcgagcttcatctacaatgatacaaaacttggaatcaccaa 43523867  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    |||  ||||| ||||||||| | || ||| | |||||||||  ||||||||||||||||| ||||||  |||||||||| |  || | || |||||| ||    
T  43523866 tttcctcacggatatgttttttcactctactagaaagaattgccaagagctctttttgaacttgatggcaagtatatttttcattctttggagcattatt 43523767  T
Q  222 caatacaacttttacaacttcatcatt 248  Q
    ||| ||||||| | |||||||||||||    
T  43523766 caacacaacttgtgcaacttcatcatt 43523740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 41099 - 40870
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    ||||||||||||| |||||| |||||||||| || || |||||  |||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||    
T  41099 aaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacaagcttcatcaacgacgatgcaaaatttagaatcaccaa 41000  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    ||| |||||||||||||||||| |||||| | ||||||||||| || | ||||||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  40999 tttcttcacgaatatgttttctcaccctactagaaagaatttgaaatatctctttttggatttgatgtgaagtatatttgcatttttctggagcattttt 40900  T
Q  222 caatacaacttttacaacttcatcattgta 251  Q
    ||| ||||||||| ||||||||||||||||    
T  40899 caacacaacttttgcaacttcatcattgta 40870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 11053944 - 11054175
Alignment:
Q  19 tataaaaccagctttattaacaaatcttaacacaaagtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcac 118  Q
    ||||||||||||||||| ||||||||||||||| | | || |||||  |||||||| ||||||| || ||||||||||||| ||||||||||||||||||    
T  11053944 tataaaaccagctttatcaacaaatcttaacacga-gccatttgttccttttttgactcatcatgagtttcatcaacaacgatgcaaaatttagaatcac 11054042  T
Q  119 caattttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcatt 218  Q
    |||||| ||||||||||| |||||| |||||| | |||||||||| ||||||||||||||||||||||||| ||||||||||  | ||||||  ||||||    
T  11054043 caatttcttcacgaatatattttctcaccctactagaaagaatttacaagagctctttttgaatttgatgttaagtatatttgcaattttctagagcatt 11054142  T
Q  219 tttcaatacaacttttacaacttcatcattgta 251  Q
    |||||| ||||||||| ||||||||||||||||    
T  11054143 tttcaacacaacttttgcaacttcatcattgta 11054175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 27129876 - 27129649
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    ||||||||||||| |||||| || ||||||  || || |||||  |||||||| ||||||  |||||||||||||||| |||||||||||||||||||||    
T  27129876 aaaccagctttatcaacaaacct-aacacaggagccatttgttccttttttgactcatcacgagcttcatcaacaacgatgcaaaatttagaatcaccaa 27129778  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    ||| |||||||||||||||||| |||||| | |||||||||||||| | ||| ||||||||||||||||||||||||||  | ||||||| || ||||||    
T  27129777 tttcttcacgaatatgttttctcaccctactagaaagaatttgcaatatctc-ttttgaatttgatgtgaagtatatttgcaattttctggagaattttt 27129679  T
Q  222 caatacaacttttacaacttcatcattgta 251  Q
    ||| ||||||||| ||||||||||||||||    
T  27129678 caacacaacttttgcaacttcatcattgta 27129649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 25535870 - 25535641
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaattt-agaatcacca 120  Q
    |||| |||||||| ||||||||||||||||| || || |||||  | |||||  ||||||  |||||||||||||||  | |  ||||| | |||| |||    
T  25535870 aaacaagctttatcaacaaatcttaacacaagagccatttgttactgttttgc-tcatcacgagcttcatcaacaacaataccgaattttacaatctcca 25535772  T
Q  121 attttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcatttt 220  Q
    |||| |||| ||||||||||| | |||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||  ||||||||  ||||||||    
T  25535771 atttcttcatgaatatgttttttgaccctagtagaaagaatttgcaagagctgtttttgaatttgatgtgaagtatacttgcatttttctagagcatttt 25535672  T
Q  221 tcaatacaacttttacaacttcatcattgta 251  Q
     ||| |||||| || | ||||||||||||||    
T  25535671 ccaacacaactatttccacttcatcattgta 25535641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 14798629 - 14798858
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    ||||||||||||| |||||| |||||||||| || || |||||  |||||||| ||||||  |||||||||||| ||| |||||||||||||||||||||    
T  14798629 aaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacgacgatgcaaaatttagaatcaccaa 14798728  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    ||| |||||||||||||||||| |||||| | ||||||||||| || | ||||||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  14798729 tttcttcacgaatatgttttctcaccctactagaaagaatttgtaatatctctttttggatttgatgtgaagtatatttgcatttttctggagcattttt 14798828  T
Q  222 caatacaacttttacaacttcatcattgta 251  Q
    ||| ||||||||| ||||||||||||||||    
T  14798829 caacacaacttttgcaacttcatcattgta 14798858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 251
Target Start/End: Original strand, 18839197 - 18839333
Alignment:
Q  115 tcaccaattttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaag 214  Q
    ||||||||||| ||| |||||||  || | |||||| |  | |||||||| || | ||||||||||||||||||||||||||| ||  | || |||| ||    
T  18839197 tcaccaattttctcatgaatatgccttttcaccctactatacagaatttgtaaaaactctttttgaatttgatgtgaagtatacttgcaattatctggag 18839296  T
Q  215 catttttcaatacaacttttacaacttcatcattgta 251  Q
     ||||| ||| |||| |||| ||||||||| ||||||    
T  18839297 gattttccaacacaaattttgcaacttcattattgta 18839333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 31420597 - 31420368
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    ||||||||||||| |||||| |||||||||| || || |||||  |||||||| ||||||  |||||||||||| ||| |||||||||||||||||||||    
T  31420597 aaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacgacgatgcaaaatttagaatcaccaa 31420498  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    ||| |||||||||||||||||| |||||| | ||||||||||| || | ||||||||| ||||||||||||||||||||  | ||||||| |||||||||    
T  31420497 tttcttcacgaatatgttttctcaccctactagaaagaatttgtaatatctctttttggatttgatgtgaagtatatttgcaattttctggagcattttt 31420398  T
Q  222 caatacaacttttacaacttcatcattgta 251  Q
    ||| ||||||||| ||||||||||||||||    
T  31420397 caacacaacttttgcaacttcatcattgta 31420368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 41595359 - 41595133
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    |||||| |||||| ||||||||||||||||| || || |||||  |||| ||| |||||   ||||||||| |||| | | ||||| || ||||||||||    
T  41595359 aaaccatctttatcaacaaatcttaacacaagagccatttgttccttttgtgactcatcgcgagcttcatctacaatgatacaaaacttggaatcaccaa 41595260  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    |||  ||||| ||||||||| | || ||| | |||||||||  ||||||||||||||||| ||||||  ||||||||||    || | || |||||| ||    
T  41595259 tttcctcacggatatgttttttcactctactagaaagaattgccaagagctctttttgaacttgatggcaagtatattttccattctttggagcattatt 41595160  T
Q  222 caatacaacttttacaacttcatcatt 248  Q
    ||| ||||||| | |||||||||||||    
T  41595159 caacacaacttgtgcaacttcatcatt 41595133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 33362229 - 33362008
Alignment:
Q  31 tttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaattttttca 129  Q
    ||||| |||||| |||||||||| || || |||||  |||||||| ||||||  |||||||||||| ||| |||||||||||||||||||||||| ||||    
T  33362229 tttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacgacgatgcaaaatttagaatcaccaatttcttca 33362130  T
Q  130 cgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcatttttcaatacaa 229  Q
    |||||||||||||| |||||| | |||||||||||||| | ||||||||| |||||||| |||||||||||  | ||||||| |||||||||||| ||||    
T  33362129 cgaatatgttttctcaccctactagaaagaatttgcaatatctctttttggatttgatgcgaagtatatttgcaattttctggagcatttttcaacacaa 33362030  T
Q  230 cttttacaacttcatcattgta 251  Q
    ||||| ||||||||||||||||    
T  33362029 ctttttcaacttcatcattgta 33362008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 42472978 - 42473075
Alignment:
Q  89 catcaacaacgctgcaaaatttagaatcaccaattttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttga 186  Q
    ||||||||||  |||||||||| |||||||||||||  || ||||||||  || | ||  |||| |||||||| ||||||| ||||||| ||| ||||    
T  42472978 catcaacaactatgcaaaatttggaatcaccaatttcctcgcgaatatgacttttcactttattagaaagaatatgcaagatctcttttcgaaattga 42473075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 22271809 - 22272037
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    ||||||||||||| |||||| |||||||||| || || |||||  |||||||| ||||||  |||||||||||| | | | |||||||||||||||||||    
T  22271809 aaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacgatgatacaaaatttagaatcaccaa 22271908  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    ||| ||||| |||||||||||| |||||| | |||||||||||||| | ||||||||| ||||||||||||||||| ||  ||||||||| |||||||||    
T  22271909 tttcttcacaaatatgttttctcaccctactagaaagaatttgcaatatctctttttggatttgatgtgaagtataattgcatttttctggagcattttt 22272008  T
Q  222 caatacaacttttacaacttcatcattgta 251  Q
    ||| |||||||||| |||||||||||||||    
T  22272009 caacacaactttta-aacttcatcattgta 22272037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 23122480 - 23122706
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    |||||| |||||| ||||||||||||||| | || || |||||  |||| ||| |||||   ||||||||| |||| | | ||||| || ||||||||||    
T  23122480 aaaccatctttatcaacaaatcttaacaccagagccatttgttccttttgtgactcatcgcgagcttcatctacaatgatacaaaacttggaatcaccaa 23122579  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    |||  ||||||||||||||| | || ||| | |||||||||| ||||||||||||||||| ||||||  ||||||||||    || | || |||||| ||    
T  23122580 tttcctcacgaatatgttttttcactctactagaaagaatttccaagagctctttttgaacttgatggcaagtatattttccattctttggagcattatt 23122679  T
Q  222 caatacaacttttacaacttcatcatt 248  Q
    ||| ||||||| | |||||||||||||    
T  23122680 caacacaacttgtgcaacttcatcatt 23122706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 14008210 - 14007984
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    |||||| |||||| ||||||||||||||||| || || |||||  |||| ||| |||||   ||||||||| |||| | | ||||| || ||||||||||    
T  14008210 aaaccatctttatcaacaaatcttaacacaagagccatttgttccttttgtgactcatcgcgagcttcatctacaatgatacaaaacttggaatcaccaa 14008111  T
Q  122 ttttttcacgaatatgttttctaaccctattggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcattttt 221  Q
    |||  ||||| ||||||||| | || ||| | |||||||||  ||||||||||||||||| ||||||  ||||||||||    || | || |||||| ||    
T  14008110 tttcctcacggatatgttttttcactctactagaaagaattgccaagagctctttttgaacttgatggcaagtatattttccattctttggagcattatt 14008011  T
Q  222 caatacaacttttacaacttcatcatt 248  Q
    ||| ||||||| | |||||||||||||    
T  14008010 caacacaacttgtgcaacttcatcatt 14007984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 9303475 - 9303251
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaaagtcagttgttta-ttttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaatcaccaa 121  Q
    ||||||||||||| ||||||||||||||  | | || ||||||  |||||||| ||||||| ||||| |||||||||| ||||||||| ||||||||||     
T  9303475 aaaccagctttatcaacaaatcttaacatga-gccatttgtttccttttttgactcatcatgagctttatcaacaacgatgcaaaatt-agaatcaccat 9303378  T
Q  122 ttttttcacgaatatgttttctaaccct-attggaaagaatttgcaagagctctttttgaatttgatgtgaagtatatttatatttttctgaagcatttt 220  Q
    ||| ||||||||| |||||||| ||||| | ||||||||||||||||    |||||||||||||||||||||||||||||  | |||||||  | |||||    
T  9303377 tttcttcacgaatttgttttctcacccttactggaaagaatttgcaa----tctttttgaatttgatgtgaagtatatttgcaattttctggtgtatttt 9303282  T
Q  221 tcaatacaacttttacaacttcatcattgta 251  Q
    |||| ||||||||| ||||||||||||||||    
T  9303281 tcaacacaacttttgcaacttcatcattgta 9303251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 95900 - 95808
Alignment:
Q  23 aaaccagctttattaacaaatcttaacacaa-agtcagttgtttattttttgaatcatcataagcttcatcaacaacgctgcaaaatttagaa 114  Q
    ||||||||||||| ||||||||||||||||| || || |||||  |||||||| ||||||  |||||||||||||||| ||||||||||||||    
T  95900 aaaccagctttatcaacaaatcttaacacaatagccatttgttccttttttgactcatcacgagcttcatcaacaacgatgcaaaatttagaa 95808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University