View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15237_low_23 (Length: 272)
Name: NF15237_low_23
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_low_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 7110080 - 7110326
Alignment:
| Q |
9 |
gagatgaatgtactttgtgtttgtcatgccattttatgaaactttttgttgtttagtgcatttacctgtcttccataagactcaaactctctattttcag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7110080 |
gagatgaatgtactttgtgtttgtcatgctattttatgaaactttttgttgtttagtgcatttacctgtcttccataagactcaaactctctattttcag |
7110179 |
T |
|
| Q |
109 |
ttagtggacacttacttacccttttttcttcctcnnnnnnnggggtctgacattcaagtggaaagtgctgtcattgctatctgttgtgcattatattatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7110180 |
ttagtggacacttacttacccttttttcttcctctttttttggggtctgacattcaagtggaaagtgctgtcattgctatctgttgtgcattatattatt |
7110279 |
T |
|
| Q |
209 |
attcattcatacattcatgaagtggctattgttgctcattccaatac |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7110280 |
attcattcatacattcatgaagtggctattgttgctcattccaatac |
7110326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 8784585 - 8784339
Alignment:
| Q |
9 |
gagatgaatgtactttgtgtttgtcatgccattttatgaaactttttgttgtttagtgcatttacctgtcttccataagactcaaactctctattttcag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8784585 |
gagatgaatgtactttgtgtttgtcatgctattttatgaaactttttgttgtttagtgcatttacttgtcttccataagactcaaactctctattttcag |
8784486 |
T |
|
| Q |
109 |
ttagtggacacttacttacccttttttcttcctcnnnnnnnggggtctgacattcaagtggaaagtgctgtcattgctatctgttgtgcattatattatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8784485 |
ttagtggacacttacttacccttttttcttcctctttttttggggtctgacattcaagtggaaagtgctgtcattgctatctgttgtgcatta---tatt |
8784389 |
T |
|
| Q |
209 |
attcattcatacattcatgaagtggctattgttgctcattccaatactga |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8784388 |
attcattcatacattcatgaagtggctattgttgctcattctaatactga |
8784339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 7104673 - 7104744
Alignment:
| Q |
51 |
tttttgttgtttagtgcatttacctgt-cttccataagactcaaactctctattttcagttagtggacactt |
121 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||||||| |||| ||||| || |||||||||| |||||||| |
|
|
| T |
7104673 |
tttttggtgtttagtgcatttacctgtccctccataatactcgaactcacttttttcagttaacggacactt |
7104744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 8789957 - 8789886
Alignment:
| Q |
51 |
tttttgttgtttagtgcatttacctgt-cttccataagactcaaactctctattttcagttagtggacactt |
121 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||||||| |||| ||||| || |||||||||| |||||||| |
|
|
| T |
8789957 |
tttttggtgtttagtgcatttacctgtccctccataatactcgaactcacttttttcagttaacggacactt |
8789886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 32150660 - 32150742
Alignment:
| Q |
51 |
tttttgttgtttagtgcatttacctgtcttccataagactcaaactctctattttcagttagtggacacttacttacccttttt |
134 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| ||||||||||| | |||||||||| ||||||||||||||| ||||| |
|
|
| T |
32150660 |
tttttggtgtttagtgcatttacctgtcctccataaaactcaaactct-ttttttcagttaacggacacttacttaccattttt |
32150742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University