View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15237_low_25 (Length: 261)
Name: NF15237_low_25
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 42273143 - 42273375
Alignment:
| Q |
17 |
aaccacacacttatatcattttaaatcagttagtgaatcactaaaatgcaaggttgaaagctatgtgtgtgtctttaagcgtagtgtgttcttgtttgtt |
116 |
Q |
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| T |
42273143 |
aaccacacacttatatcattttagttcagttagtgaatcactaaaatgcaaggttgaaagctatgtgtgtgtctttaagcgtagcgtgttcttttttgtt |
42273242 |
T |
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| Q |
117 |
tgatgttcacttttctagtcatgaatgaattatgactaagagtatttatgcattttatgtgtgacttcacatccctgtcactccgatgtatccaacatgt |
216 |
Q |
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| T |
42273243 |
tgatgttcacttttctagtcatgaatgaattatgactaagagtatttctgcattttatgtgtgacttcacatccctgtcactccgacgtatccaacatgt |
42273342 |
T |
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| Q |
217 |
aaaagtagtttcctttttggtactcctgagtat |
249 |
Q |
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| T |
42273343 |
aagagtagtttcctttttggtactcctgagtat |
42273375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 49160665 - 49160749
Alignment:
| Q |
168 |
attttatgtgtgacttcacatccctgtcactcc-----gatgtatccaacatgtaaaagtagtttcctttttggtactcctgagt |
247 |
Q |
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| T |
49160665 |
attttatgtgtgacttcacatctctgtcactccataacgatgtatccaacatgtaaaagtagtttcctttttggtactcctgagt |
49160749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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