View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15237_low_27 (Length: 239)
Name: NF15237_low_27
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 898629 - 898852
Alignment:
| Q |
3 |
tggacattattatccacattcctaccatagtaaatttcagacttcggcaaactgacaatacaaaaacannnnnnnn---agcaaagtattgtagattctt |
99 |
Q |
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| T |
898629 |
tggacattattatccacattcctaccatagtaaatttcagacttcggcaatctgacaatacaaaaacatttttttttttagcaaagtattgtagattctt |
898728 |
T |
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| Q |
100 |
taattttggtatttatggaatctgacaatacaaaaacnnnnnnnnnagcaaaagcaaagttaattcatttcatttaaaattagtcgatacaaaggagttg |
199 |
Q |
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| T |
898729 |
taattttggtatttatggaatctgacaatacaaaaactttttttttagcaaaagcaaagttaattcatttcatttaaaattagccgatacaaaggagttg |
898828 |
T |
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| Q |
200 |
atacattatgaaaaacatggggtt |
223 |
Q |
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| T |
898829 |
atacattatgaaaaacatggggtt |
898852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 5792299 - 5792224
Alignment:
| Q |
146 |
agcaaaagcaaagttaattcatttcatttaaaattagtcgatacaaaggagttgatacattatgaaaaacatgggg |
221 |
Q |
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| T |
5792299 |
agcaaaagcaaatctaattcatttcattcaaaattaattggtacaaacaagttggtacattatgaaaaatatgggg |
5792224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 11629651 - 11629576
Alignment:
| Q |
146 |
agcaaaagcaaagttaattcatttcatttaaaattagtcgatacaaaggagttgatacattatgaaaaacatgggg |
221 |
Q |
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| T |
11629651 |
agcaaatgcaaagttaattcatttcattaaaaattaacggatacaaagtaggtgctacatgatgaaagatatgggg |
11629576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 34752619 - 34752694
Alignment:
| Q |
146 |
agcaaaagcaaagttaattcatttcatttaaaattagtcgatacaaaggagttgatacattatgaaaaacatgggg |
221 |
Q |
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| T |
34752619 |
agcaaaggcaaagttaattcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgggg |
34752694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27053567 - 27053620
Alignment:
| Q |
1 |
gttggacattattatccacattcctaccatagtaaatttcagacttcggcaaac |
54 |
Q |
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| T |
27053567 |
gttggacattattatcaacattcctactacagtaaatttcagacttcggcaaac |
27053620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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