View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15237_low_6 (Length: 470)
Name: NF15237_low_6
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15237_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 455
Target Start/End: Complemental strand, 8052143 - 8051718
Alignment:
| Q |
30 |
atcaggatccatagcatgtgaatcatatgaagcaggatgtgttaaatcgctttgtttccatggtcccgattgcattgattgtatcttaagagnnnnnnnn |
129 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
8052143 |
atcaggatccatagcaagtgaatcaaatgaagcaggatgtgttaaatcactttgtttccatggtccagattgcattgaatgaatcttaagagttttattt |
8052044 |
T |
|
| Q |
130 |
cctgcttttattgcttcataggtgcttaaaacatgaggaatatacttttccattactttatctctatgcttctcatcaaaacttaacacaaacccatttt |
229 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8052043 |
cctgcttttatagcttcataagtgcttaaaacatgtggaatatacttttccattactttatctctatgcttctcatcaaaacttaacacaaacccatttt |
8051944 |
T |
|
| Q |
230 |
catcatagtcttttgacctatgcttatattccttatactccttttttggattatcaaaaccatcatcattgttggaattttcaacaagcctccatttaag |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8051943 |
catcatagtcttttgacctatgcttatattccttatactccttttttggattatcaaaaccatcaccattgttggaattttcaacaagcctccatttaag |
8051844 |
T |
|
| Q |
330 |
cttgatatcatcaaactcatcctccaccacttgttttccatcaaaagctagaactatgttgttatgtttggatatttttccaactttaagggatttgtaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8051843 |
cttgatatcatcaaactcatcctccaccacttgttttccatcaaaagctagaaccatgttgttatgtttggatatttttccaactttaagggatttgtaa |
8051744 |
T |
|
| Q |
430 |
gtgttggatattttagtagggatata |
455 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8051743 |
gtgttggatattttagtagggatata |
8051718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 8060224 - 8060139
Alignment:
| Q |
142 |
gcttcataggtgcttaaaacatgaggaatatacttttccattactttatctctatgcttctcatcaaaacttaacacaaacccatt |
227 |
Q |
| |
|
|||||||| | |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8060224 |
gcttcataagggcttaaaacatgtggaatatacttctccattactttatctctatgcttctcatcaaaacttaacacaaacccatt |
8060139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 451
Target Start/End: Complemental strand, 8060036 - 8059900
Alignment:
| Q |
315 |
aagcctccatttaagcttgatatcatcaaactcatcctccaccacttgttttccatcaaaagctagaactatgttgttatgtttggatatttttccaact |
414 |
Q |
| |
|
|||| ||||||||| |||||| | ||||| |||||| |||| || |||||||||||||||| | | |||||||| | |||||||||||||||| |
|
|
| T |
8060036 |
aagcatccatttaatcttgatgccttcaaattcatccaccacagtttactttccatcaaaagctacgagtgcattgttatgatcggatatttttccaact |
8059937 |
T |
|
| Q |
415 |
ttaagggatttgtaagtgttggatattttagtaggga |
451 |
Q |
| |
|
|| |||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
8059936 |
ttgagggatgtgtaagttttggatattctagtaggga |
8059900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 47547510 - 47547595
Alignment:
| Q |
142 |
gcttcataggtgcttaaaacatgaggaatatacttttccattactttatctctatgcttctcatcaaaacttaacacaaacccatt |
227 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47547510 |
gcttcataagtgcttaaaacatgtggaatatacttctccatcactttatatctatgcttctcatcaaaacttaacacaaacccatt |
47547595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 364 - 451
Target Start/End: Original strand, 47547747 - 47547834
Alignment:
| Q |
364 |
tttccatcaaaagctagaactatgttgttatgtttggatatttttccaactttaagggatttgtaagtgttggatattttagtaggga |
451 |
Q |
| |
|
|||||||||||||||| | || ||||||||| || ||||||||||||| ||| |||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
47547747 |
tttccatcaaaagctacgagtacgttgttatgattagatatttttccaattttgagggatgtgtaagttttggatattctagtaggga |
47547834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University