View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15237_low_7 (Length: 452)

Name: NF15237_low_7
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15237_low_7
NF15237_low_7
[»] chr7 (7 HSPs)
chr7 (19-452)||(41511299-41511732)
chr7 (24-452)||(48532653-48533066)
chr7 (19-111)||(41520680-41520772)
chr7 (198-306)||(41518136-41518244)
chr7 (195-359)||(41562565-41562729)
chr7 (198-306)||(41537115-41537223)
chr7 (267-309)||(3086715-3086757)
[»] chr5 (4 HSPs)
chr5 (198-382)||(20155175-20155359)
chr5 (266-316)||(32075095-32075145)
chr5 (266-364)||(20156858-20156956)
chr5 (270-316)||(31005856-31005902)
[»] chr6 (7 HSPs)
chr6 (260-308)||(845012-845060)
chr6 (260-308)||(870296-870344)
chr6 (267-309)||(4461418-4461460)
chr6 (267-306)||(4622437-4622476)
chr6 (267-309)||(4557420-4557462)
chr6 (267-309)||(4592526-4592568)
chr6 (268-309)||(4490150-4490191)
[»] scaffold0288 (1 HSPs)
scaffold0288 (267-309)||(3514-3556)
[»] scaffold0184 (1 HSPs)
scaffold0184 (269-307)||(11649-11687)
[»] chr8 (8 HSPs)
chr8 (261-307)||(1969140-1969186)
chr8 (264-309)||(33005112-33005157)
chr8 (261-301)||(3770197-3770237)
chr8 (261-304)||(1963531-1963574)
chr8 (268-306)||(560457-560495)
chr8 (268-308)||(548744-548784)
chr8 (261-301)||(3701191-3701231)
chr8 (268-308)||(23423820-23423860)
[»] scaffold0891 (1 HSPs)
scaffold0891 (260-303)||(3434-3477)
[»] chr3 (3 HSPs)
chr3 (260-307)||(35774614-35774661)
chr3 (260-303)||(35848395-35848438)
chr3 (260-303)||(35866066-35866109)
[»] chr4 (1 HSPs)
chr4 (198-316)||(8136460-8136578)
[»] chr1 (1 HSPs)
chr1 (266-306)||(27224174-27224214)


Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 41511732 - 41511299
Alignment:
Q  19 cattggccctttctcttctctctttactctcttcaacttcctcattcatcacattgcatattgcctctttaataacttccttcttcacaaccacccctag 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41511732 cattagccctttctcttctctctttactctcttcaacttcctcattcatcacattgcatattgcctctttaataacttccttcttcacaaccacccctaa 41511633  T
Q  119 tttctcttcctctccccacttcaatggaaattcaacaccaagactcactccaatcctcaaaacttgagtaacaagtttctcattcaaaaattggtcagca 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41511632 tttctcttcctctccccaattcaatggaaattcaacaccaagactcactccaatcctcaaaacttgagtaacaagtttctcattcaaaaattggtcagca 41511533  T
Q  219 aataatggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattgaagaatgtgata 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41511532 aataatggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattgaagaatgtgata 41511433  T
Q  319 atatcaccatttgtggggcccaccctctaattataagtcctctcccgttattcctttcctcaaactttccatcactaatccatttttccaactcttcact 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41511432 atatcaccatttgtggggcccaccctctaattataagtcctctccctttattcctttcctcaaacttttcatcactaatccatttttccaactcttcact 41511333  T
Q  419 tttataaattccttccctaataacccaaataaat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  41511332 tttataaattccttccctaataacccaaataaat 41511299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 24 - 452
Target Start/End: Complemental strand, 48533066 - 48532653
Alignment:
Q  24 gccctttctcttctctctttactctcttcaacttcctcattcatcacattgcatattgcctctttaataacttccttcttcacaaccacccctagtttct 123  Q
    ||||||||||||||||||||||| |||||   | |||||| ||||||  |||||||||||||||||||| ||||||||||||| | ||| ||||   |||    
T  48533066 gccctttctcttctctctttactttcttc---tccctcatccatcaccatgcatattgcctctttaataccttccttcttcaccaacacacctaaactct 48532970  T
Q  124 cttcctctccccacttcaatggaaattcaacaccaagactcactccaatcctcaaaacttgagtaacaagtttctcattcaaaaattggtcagcaaataa 223  Q
    ||||| ||||| || ||| |||||  || |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  48532969 cttccactcccaacctcattggaacctctacaccaaggctcactccaatcctcaacacttgagtaacaagcttctcattcaaaaattggtcagcaaataa 48532870  T
Q  224 tggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattgaagaatgtgataatatc 323  Q
     ||||||||||||| ||| | ||||  ||||||||||||||||||||||||||| |||||||| || || ||||| ||||||||||  |||||||||||     
T  48532869 cggccaagttaccaatggcaaaccagcacttatcccttcaagtgttgaattccatccacaatgtgttaagaatcctccaattgaagggtgtgataatatt 48532770  T
Q  324 accatttgtggggcccaccctctaattataagtcctctcccgttattcctttcctcaaactttccatcactaatccatttttccaactcttcacttttat 423  Q
    | || |||||| ||||| |||||||||||||| |||||||| || || ||||||            |||||||||||||||||||||||||| ||  | |    
T  48532769 agcacttgtggagcccaacctctaattataaggcctctccctttgtttctttcc------------tcactaatccatttttccaactcttcgctacttt 48532682  T
Q  424 aaattccttccctaataacccaaataaat 452  Q
     | ||||||||||||||||||||||||||    
T  48532681 tatttccttccctaataacccaaataaat 48532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 41520772 - 41520680
Alignment:
Q  19 cattggccctttctcttctctctttactctcttcaacttcctcattcatcacattgcatattgcctctttaataacttccttcttcacaacca 111  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41520772 cattagccctttctcttctctctttactctcttgatcttcctcattcatcacattgcatattgcctctttaataccttccttcttcacaacca 41520680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 41518244 - 41518136
Alignment:
Q  198 tcattcaaaaattggtcagcaaataatggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaaatc 297  Q
    ||||||||||||||||| ||||| | |||||| || |||||||||||||||  || |||  ||||||| || ||||||||||||||||| || || ||||    
T  41518244 tcattcaaaaattggtctgcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatc 41518145  T
Q  298 caccaattg 306  Q
    | |||||||    
T  41518144 ctccaattg 41518136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 359
Target Start/End: Complemental strand, 41562729 - 41562565
Alignment:
Q  195 ttctcattcaaaaattggtcagcaaataatggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaa 294  Q
    |||||||| || ||||| |||||||| | ||||||||||| |||||||||||||      ||  |||| | |||||||||||||||||||||||  ||||    
T  41562729 ttctcattaaagaattgttcagcaaacattggccaagttatcattggtacaccacttgaaattgcttccattgttgaattccaaccacaatgagataaaa 41562630  T
Q  295 atccaccaattgaagaatgtgataatatcaccatttgtggggcccaccctctaattataagtcct 359  Q
    |||||||| |||||| |||||| |||||  | | |||||| ||||| ||| ||| ||||| ||||    
T  41562629 atccaccagttgaaggatgtgacaatatttcaacttgtggagcccatcctttaactataactcct 41562565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 41537223 - 41537115
Alignment:
Q  198 tcattcaaaaattggtcagcaaataatggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaaatc 297  Q
    |||||||||||||| || ||||| | |||||| || |||||||||||||||  || |||  ||||||| || ||||||||||||||||| || || ||||    
T  41537223 tcattcaaaaattgatccgcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatc 41537124  T
Q  298 caccaattg 306  Q
    | |||||||    
T  41537123 ctccaattg 41537115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 3086715 - 3086757
Alignment:
Q  267 gttgaattccaaccacaatgagtcaaaaatccaccaattgaag 309  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||    
T  3086715 gttgagttccatccacaatgagtcaagaatccaccaattgaag 3086757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 198 - 382
Target Start/End: Complemental strand, 20155359 - 20155175
Alignment:
Q  198 tcattcaaaaattggtcagcaaataatggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaaatc 297  Q
    ||||| |||||||| ||||||||||| ||||| || | |||||| || ||||| | ||  ||||||| |||||||||||| |||||||| ||||| ||||    
T  20155359 tcatttaaaaattgttcagcaaataaaggccatgtaatcattggcaccccaaagcatacaccttcaattgttgaattccatccacaatgtgtcaagaatc 20155260  T
Q  298 caccaattgaagaatgtgataatatcaccatttgtggggcccaccctctaattataagtcctctcccgttattcctttcctcaaa 382  Q
    | |||||||||| ||| || | ||| |  |||||||| ||||| ||| |||| | |||||||||||| |||  ||||||||||||    
T  20155259 ctccaattgaaggatgagaaagtattaaaatttgtggtgcccatcctttaatcaaaagtcctctccctttaaccctttcctcaaa 20155175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 32075095 - 32075145
Alignment:
Q  266 tgttgaattccaaccacaatgagtcaaaaatccaccaattgaagaatgtga 316  Q
    ||||||||||||||||||||||| | ||||||||||||| |||| ||||||    
T  32075095 tgttgaattccaaccacaatgagaccaaaatccaccaatagaaggatgtga 32075145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 364
Target Start/End: Original strand, 20156858 - 20156956
Alignment:
Q  266 tgttgaattccaaccacaatgagtcaaaaatccaccaattgaagaatgtgataatatcaccatttgtggggcccaccctctaattataagtcctctccc 364  Q
    |||||||||||| |||||||| ||||||||| |||| ||||    |||||| |||||||  | |||||| ||||| |||||||| | || |||||||||    
T  20156858 tgttgaattccatccacaatgtgtcaaaaatgcacctattgctttatgtgacaatatcaaaacttgtggagcccaacctctaatcaaaattcctctccc 20156956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 31005902 - 31005856
Alignment:
Q  270 gaattccaaccacaatgagtcaaaaatccaccaattgaagaatgtga 316  Q
    ||||||||||||||||| | | ||||||||||||| |||||||||||    
T  31005902 gaattccaaccacaatgtgaccaaaatccaccaatagaagaatgtga 31005856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 845012 - 845060
Alignment:
Q  260 ttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattgaa 308  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  845012 ttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattgaa 845060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 870296 - 870344
Alignment:
Q  260 ttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattgaa 308  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  870296 ttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattgaa 870344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 4461418 - 4461460
Alignment:
Q  267 gttgaattccaaccacaatgagtcaaaaatccaccaattgaag 309  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  4461418 gttgaattccatccacaatgagtcaagaatccaccaattgaag 4461460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 4622437 - 4622476
Alignment:
Q  267 gttgaattccaaccacaatgagtcaaaaatccaccaattg 306  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  4622437 gttgaattccatccacaatgagtcaagaatccaccaattg 4622476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 4557420 - 4557462
Alignment:
Q  267 gttgaattccaaccacaatgagtcaaaaatccaccaattgaag 309  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||    
T  4557420 gttgagttccatccacaatgagtcaagaatccaccaattgaag 4557462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 4592526 - 4592568
Alignment:
Q  267 gttgaattccaaccacaatgagtcaaaaatccaccaattgaag 309  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||    
T  4592526 gttgagttccatccacaatgagtcaagaatccaccaattgaag 4592568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 4490191 - 4490150
Alignment:
Q  268 ttgaattccaaccacaatgagtcaaaaatccaccaattgaag 309  Q
    |||| ||||| |||||||||||||| ||||||||||||||||    
T  4490191 ttgagttccatccacaatgagtcaagaatccaccaattgaag 4490150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 3556 - 3514
Alignment:
Q  267 gttgaattccaaccacaatgagtcaaaaatccaccaattgaag 309  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  3556 gttgaattccatccacaatgagtcaagaatccaccaattgaag 3514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 11649 - 11687
Alignment:
Q  269 tgaattccaaccacaatgagtcaaaaatccaccaattga 307  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  11649 tgaattccaaccacaatgagtcaaaaatgcaccaattga 11687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 1969186 - 1969140
Alignment:
Q  261 tcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattga 307  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  1969186 tcaagggttgaattccagccacaatgagtcaagaatccaccaattga 1969140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 33005112 - 33005157
Alignment:
Q  264 agtgttgaattccaaccacaatgagtcaaaaatccaccaattgaag 309  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  33005112 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaag 33005157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 3770197 - 3770237
Alignment:
Q  261 tcaagtgttgaattccaaccacaatgagtcaaaaatccacc 301  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  3770197 tcaagtgttgaattccaaccacaatgtgttaaaaatccacc 3770237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 1963574 - 1963531
Alignment:
Q  261 tcaagtgttgaattccaaccacaatgagtcaaaaatccaccaat 304  Q
    ||||| |||||||||||||||||||||| |||||| ||||||||    
T  1963574 tcaagggttgaattccaaccacaatgagacaaaaacccaccaat 1963531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 560457 - 560495
Alignment:
Q  268 ttgaattccaaccacaatgagtcaaaaatccaccaattg 306  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  560457 ttgaattccaaccacaatgagttaaaaatgcaccaattg 560495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 548744 - 548784
Alignment:
Q  268 ttgaattccaaccacaatgagtcaaaaatccaccaattgaa 308  Q
    ||||| |||||||||||||||||||||| |||||| |||||    
T  548744 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaa 548784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 3701231 - 3701191
Alignment:
Q  261 tcaagtgttgaattccaaccacaatgagtcaaaaatccacc 301  Q
    |||||||| ||||||||||||||||| || |||||||||||    
T  3701231 tcaagtgtcgaattccaaccacaatgtgttaaaaatccacc 3701191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 23423860 - 23423820
Alignment:
Q  268 ttgaattccaaccacaatgagtcaaaaatccaccaattgaa 308  Q
    ||||| |||||||||||||||||||||| |||||| |||||    
T  23423860 ttgaactccaaccacaatgagtcaaaaaaccaccagttgaa 23423820  T

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Target: scaffold0891 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 3477 - 3434
Alignment:
Q  260 ttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaa 303  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||    
T  3477 ttcaagtgtagaattccaaccacaatgagtcaagaatcccccaa 3434  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 35774614 - 35774661
Alignment:
Q  260 ttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattga 307  Q
    ||||||||| |||||||||||||||||||| || ||||| ||||||||    
T  35774614 ttcaagtgtagaattccaaccacaatgagttaagaatcccccaattga 35774661  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 35848395 - 35848438
Alignment:
Q  260 ttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaa 303  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||    
T  35848395 ttcaagtgtagaattccaaccacaatgagtcaagaatcccccaa 35848438  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 35866066 - 35866109
Alignment:
Q  260 ttcaagtgttgaattccaaccacaatgagtcaaaaatccaccaa 303  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||    
T  35866066 ttcaagtgtagaattccaaccacaatgagtcaagaatcccccaa 35866109  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 8136460 - 8136578
Alignment:
Q  198 tcattcaaaaattggtcagcaaataatggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaaatc 297  Q
    ||||| |||||||| ||  |||| | |||||| || |||||||||||||||  || |||  |||| | ||| ||||||||||||||||| || || ||||    
T  8136460 tcattaaaaaattgatctccaaaaagtggccatgtaaccattggtacaccagcacatattgcttccattgtagaattccaaccacaatgtgttaagaatc 8136559  T
Q  298 caccaattgaagaatgtga 316  Q
    | ||||||| || ||||||    
T  8136560 ctccaattgcaggatgtga 8136578  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 27224174 - 27224214
Alignment:
Q  266 tgttgaattccaaccacaatgagtcaaaaatccaccaattg 306  Q
    ||||||||||||||||||||| ||||||||| |||| ||||    
T  27224174 tgttgaattccaaccacaatgtgtcaaaaatgcacctattg 27224214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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