View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15237_low_8 (Length: 451)

Name: NF15237_low_8
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15237_low_8
NF15237_low_8
[»] chr6 (6 HSPs)
chr6 (277-433)||(338670-338829)
chr6 (17-119)||(18738628-18738730)
chr6 (27-93)||(23427546-23427612)
chr6 (27-93)||(23421700-23421766)
chr6 (17-110)||(33660902-33660997)
chr6 (178-227)||(338913-338962)
[»] chr8 (12 HSPs)
chr8 (17-119)||(30714217-30714319)
chr8 (17-119)||(30721994-30722096)
chr8 (17-119)||(30727602-30727704)
chr8 (27-110)||(37204299-37204382)
chr8 (27-110)||(37209776-37209859)
chr8 (27-88)||(21241236-21241297)
chr8 (27-88)||(21247740-21247801)
chr8 (27-89)||(27679657-27679719)
chr8 (13-95)||(24042880-24042962)
chr8 (27-89)||(27683439-27683501)
chr8 (26-68)||(26196960-26197002)
chr8 (346-398)||(27715466-27715518)
[»] chr1 (17 HSPs)
chr1 (26-116)||(11660241-11660331)
chr1 (17-119)||(31092949-31093051)
chr1 (17-116)||(31099558-31099657)
chr1 (17-119)||(18540707-18540809)
chr1 (26-119)||(11654084-11654177)
chr1 (17-117)||(18534983-18535083)
chr1 (17-111)||(27347175-27347271)
chr1 (17-110)||(7876146-7876239)
chr1 (27-110)||(38984976-38985057)
chr1 (27-110)||(38991163-38991244)
chr1 (17-119)||(35625252-35625356)
chr1 (27-110)||(28512874-28512955)
chr1 (27-86)||(28519339-28519398)
chr1 (17-119)||(37365151-37365255)
chr1 (26-116)||(38736103-38736195)
chr1 (17-94)||(37356760-37356837)
chr1 (26-116)||(39492804-39492894)
[»] chr4 (26 HSPs)
chr4 (17-119)||(25687560-25687662)
chr4 (17-119)||(25697328-25697430)
chr4 (27-119)||(910849-910941)
chr4 (26-110)||(18890066-18890150)
chr4 (17-116)||(30679797-30679896)
chr4 (26-112)||(1874001-1874087)
chr4 (17-119)||(23188018-23188120)
chr4 (26-116)||(1913736-1913828)
chr4 (17-116)||(30673704-30673803)
chr4 (17-119)||(23200581-23200683)
chr4 (27-110)||(12435360-12435441)
chr4 (27-110)||(42404707-42404788)
chr4 (17-116)||(12659194-12659295)
chr4 (26-119)||(12428885-12428978)
chr4 (27-88)||(42411171-42411232)
chr4 (29-93)||(917317-917381)
chr4 (26-116)||(12439297-12439387)
chr4 (27-110)||(29333701-29333782)
chr4 (30-119)||(12665709-12665793)
chr4 (17-94)||(16325745-16325822)
chr4 (17-94)||(16334789-16334866)
chr4 (33-84)||(4393790-4393841)
chr4 (32-112)||(55325552-55325631)
chr4 (40-105)||(33360198-33360263)
chr4 (26-110)||(48305352-48305435)
chr4 (325-392)||(54927607-54927674)
[»] chr2 (11 HSPs)
chr2 (17-119)||(25445061-25445163)
chr2 (17-119)||(25454719-25454821)
chr2 (17-116)||(19437542-19437641)
chr2 (17-116)||(19443117-19443216)
chr2 (17-119)||(43293138-43293242)
chr2 (17-119)||(43287393-43287497)
chr2 (17-115)||(24056628-24056728)
chr2 (17-119)||(24053289-24053392)
chr2 (26-84)||(31437215-31437273)
chr2 (26-84)||(8872304-8872362)
chr2 (18-84)||(31433101-31433167)
[»] chr5 (10 HSPs)
chr5 (26-119)||(35264542-35264635)
chr5 (26-119)||(35270283-35270376)
chr5 (17-112)||(21171196-21171291)
chr5 (17-116)||(23058959-23059058)
chr5 (17-116)||(39653932-39654031)
chr5 (17-116)||(23053384-23053483)
chr5 (27-112)||(16675626-16675711)
chr5 (17-112)||(21178057-21178154)
chr5 (17-110)||(25365403-25365498)
chr5 (40-81)||(2135850-2135891)
[»] scaffold0102 (1 HSPs)
scaffold0102 (17-119)||(14080-14182)
[»] chr7 (9 HSPs)
chr7 (17-115)||(29176599-29176697)
chr7 (17-115)||(29185578-29185676)
chr7 (27-110)||(22822601-22822684)
chr7 (27-110)||(22826904-22826987)
chr7 (17-112)||(8242596-8242691)
chr7 (17-112)||(8248165-8248260)
chr7 (17-119)||(340293-340397)
chr7 (17-119)||(346527-346631)
chr7 (27-118)||(25830392-25830483)
[»] chr3 (12 HSPs)
chr3 (17-119)||(2982181-2982283)
chr3 (17-110)||(2978246-2978339)
chr3 (17-119)||(21453215-21453319)
chr3 (17-119)||(21458389-21458493)
chr3 (26-119)||(49486724-49486819)
chr3 (26-116)||(49491224-49491316)
chr3 (26-119)||(21473168-21473263)
chr3 (17-116)||(15752502-15752603)
chr3 (17-116)||(15758295-15758396)
chr3 (17-119)||(21883479-21883583)
chr3 (17-119)||(21877219-21877323)
chr3 (17-119)||(21477546-21477650)
[»] scaffold0014 (1 HSPs)
scaffold0014 (26-119)||(111939-112034)
[»] scaffold0591 (1 HSPs)
scaffold0591 (17-119)||(9378-9481)
[»] scaffold0258 (1 HSPs)
scaffold0258 (26-119)||(6280-6373)
[»] scaffold0079 (1 HSPs)
scaffold0079 (17-94)||(57994-58071)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 277 - 433
Target Start/End: Complemental strand, 338829 - 338670
Alignment:
Q  277 atctcatttggttaatatataatatttcgacagatgtt--ggtgtatagg-gggtaggaaggaggcatgcatgtgtggacttaattggagtttctccgct 373  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  338829 atctcatttggttaatatataatatttcgacagatgttttggtgtataggtgggtaggaaggagacatgcatgtgtggatttaattggagtttctccgct 338730  T
Q  374 tgtgggtttggagaccgaggctttttctatgtgagttttggggtaaccttcagttggatg 433  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  338729 tgtgggtttggagaccgaggctttttctaggtgagttttggggtagccttcggttggatg 338670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 18738628 - 18738730
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||    
T  18738628 tactaggttattgggcttagttcataagctactctatttacctataaatagagctcatttgtaacattgagagacacgtcagtaaataagaatactgctc 18738727  T
Q  117 cta 119  Q
    |||    
T  18738728 cta 18738730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 23427546 - 23427612
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacac 93  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23427546 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacac 23427612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 23421700 - 23421766
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacac 93  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23421700 ttgggcttagttcataagttactctatttccctataaatagagctcatttgtaacattgatacacac 23421766  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 33660997 - 33660902
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaata 110  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||  |||| ||||||| |||||||||||||    
T  33660997 tactaggttattgggcttagttcataagctactctattttcttataaatagagttcatttgtaacattgagatacacacatcggtgaataagaata 33660902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 338962 - 338913
Alignment:
Q  178 aaaactcttattttctttcttacgtttggagcataaattttccacatctg 227  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  338962 aaaactcttattttctttcttacgtttggtgcataaattttccacatctg 338913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 30714319 - 30714217
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30714319 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 30714220  T
Q  117 cta 119  Q
    |||    
T  30714219 cta 30714217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 30722096 - 30721994
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30722096 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 30721997  T
Q  117 cta 119  Q
    |||    
T  30721996 cta 30721994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 30727704 - 30727602
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30727704 tactaggttattgggcttaattcataagctactatattttcctaaaaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 30727605  T
Q  117 cta 119  Q
    |||    
T  30727604 cta 30727602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 37204299 - 37204382
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37204299 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 37204382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 37209776 - 37209859
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37209776 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 37209859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 21241236 - 21241297
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgata 88  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21241236 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgata 21241297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 21247740 - 21247801
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgata 88  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21247740 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgata 21247801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 27679719 - 27679657
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatat 89  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27679719 ttgggcttagttcataagctactctatttccctataaatagagctaatttgtaacattgatat 27679657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 24042962 - 24042880
Alignment:
Q  13 ataatactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacat 95  Q
    |||||| ||| | |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||    
T  24042962 ataatattagattattgggcttagttcataagctactctatttctctataaatagagctcatatgtaacattaaaatacacat 24042880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 27683501 - 27683439
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatat 89  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27683501 ttgggtttagttcataagttactctatttccctataaatagagctcatttgtaacattgatat 27683439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 26196960 - 26197002
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaataga 68  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26196960 attgggcttagttcataagctactctatttccctataaataga 26197002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 27715518 - 27715466
Alignment:
Q  346 gtgtggacttaattggagtttctccgcttgtgggtttggagaccgaggctttt 398  Q
    ||||||||||||||||  ||| ||| |||||||| |||||| |||||||||||    
T  27715518 gtgtggacttaattgggatttttccccttgtgggattggaggccgaggctttt 27715466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 11660241 - 11660331
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11660241 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 11660331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 31093051 - 31092949
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  31093051 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatatacatcagtgaataaaaatactgctc 31092952  T
Q  117 cta 119  Q
    |||    
T  31092951 cta 31092949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 31099657 - 31099558
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  31099657 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatatacatcagtgaataaaaatactgctc 31099558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 18540809 - 18540707
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18540809 tactaggttattgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgatatacagatcagtgaataagaatactgctc 18540710  T
Q  117 cta 119  Q
    |||    
T  18540709 cta 18540707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 11654084 - 11654177
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctccta 119  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11654084 attgggcttaattcataagctattctatttccctataaatagagttcatttgtaacattgatatacacatcaatgaataagaatactgctccta 11654177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 18535083 - 18534983
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18535083 tactaggttattgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgatatacagatcagtgaataagaatactgctc 18534984  T
Q  117 c 117  Q
    |    
T  18534983 c 18534983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 27347271 - 27347175
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatac 111  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  27347271 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaatac 27347175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 7876146 - 7876239
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    |||||| | ||| |||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  7876146 tactaggttattaggcttagttcgtaagctactatatttccctataaatagagctcatttgtaacattgagatacacattagtgaataagaata 7876239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 38984976 - 38985057
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||    
T  38984976 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattg--atacacactagtgaataagaata 38985057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 38991163 - 38991244
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||    
T  38991163 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattg--atacacactagtgaataagaata 38991244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 35625356 - 35625252
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||  |||| |||||| | ||||||||||||||||    
T  35625356 tactagattattgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacacacattattgaataagaatactgc 35625257  T
Q  115 tccta 119  Q
    |||||    
T  35625256 tccta 35625252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 28512874 - 28512955
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||  ||||||||||||||    
T  28512874 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattg--agacacactagtgaataagaata 28512955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 28519339 - 28519398
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattga 86  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28519339 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattga 28519398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 37365255 - 37365151
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||  |||| |||||| | |||||||||||||||     
T  37365255 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacacacattattgaataagaatactgt 37365156  T
Q  115 tccta 119  Q
    |||||    
T  37365155 tccta 37365151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 38736103 - 38736195
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctc 116  Q
    |||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||  |||| | |||||||||||||| ||||||||||    
T  38736103 attgggcttagttcataagctactctattttcttataaatagagttcatttgtaacattcagatacatacatcagtgaataataatactgctc 38736195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 37356837 - 37356760
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacaca 94  Q
    |||||| | |||||||||| ||||||||||||| ||||| | |||||||||||||||||| ||||||||| |||||||    
T  37356837 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttataacattgagatacaca 37356760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 39492804 - 39492894
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||||||| |  |||| |||||||||||| ||||||||| |  |||||||||| | ||| ||| | |||||||||||||||||||||||    
T  39492804 attgggcttagtctataaactactctatttctctataaataaaattcatttgtaagagtgagatatatatcagtgaataagaatactgctc 39492894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 25687662 - 25687560
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  25687662 tactagtttattgggcttaattcataagctactctatttccctataaacagagctcatttgtaacattgatatatagatcagtgaataagaatactgctc 25687563  T
Q  117 cta 119  Q
    |||    
T  25687562 cta 25687560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 25697430 - 25697328
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  25697430 tactagtttattggacttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatatagatcagtgaataagaatactgctc 25697331  T
Q  117 cta 119  Q
    |||    
T  25697330 cta 25697328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 910941 - 910849
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctccta 119  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  910941 ttgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgatacacagatcagtgaataagaatactgctccta 910849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 18890066 - 18890150
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  18890066 attgggcttaattcataagctactctatttccctataaatagaactcatttgtaacattgatatacacattagtgaataagaata 18890150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 30679896 - 30679797
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  30679896 tactaggttattgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgataaatacattagtgaataagaatactgctc 30679797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 1874087 - 1874001
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatact 112  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  1874087 attgggcttaattcataggctactctatttccctataaatatagctcatttgtaacattgagatacacatcagtgaataagaatact 1874001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 23188018 - 23188120
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| ||    
T  23188018 tactagtttattgagcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatagacagataagtgaataagaatactgttc 23188117  T
Q  117 cta 119  Q
    |||    
T  23188118 cta 23188120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 1913828 - 1913736
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctc 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  1913828 attgggcttaattcataggctactctatttccctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctc 1913736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 30673803 - 30673704
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||||||    
T  30673803 tactaggttattgggcttagttcataagctactctatttccctataaatagagttcatttgtaacattgataaatacattagtgaataagaatactgctc 30673704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 23200581 - 23200683
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||||| |||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||| ||||| |||||||| ||    
T  23200581 tactagtttattgggcttagttcataagttactctacttccctataaatagaactcatttgtaacattgatagacagatcagcgaatacgaatactgttc 23200680  T
Q  117 cta 119  Q
    |||    
T  23200681 cta 23200683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 12435441 - 12435360
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||    
T  12435441 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattg--atacacactagtgaataagaata 12435360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 42404707 - 42404788
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||    
T  42404707 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattg--atacacactagtgaataagaata 42404788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 12659295 - 12659194
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |  |||| |||||| ||||||||||||||||||    
T  12659295 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacactgagatacacacattagtgaataagaatactgc 12659196  T
Q  115 tc 116  Q
    ||    
T  12659195 tc 12659194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 12428978 - 12428885
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctccta 119  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||   | | ||| ||||||||||||||||||||||    
T  12428978 attgggcttagttcataagctactctatttccctataaatagaactcatttgtaacagtgagtgagagatccgtgaataagaatactgctccta 12428885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 42411171 - 42411232
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgata 88  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42411171 ttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgata 42411232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 917381 - 917317
Alignment:
Q  29 gggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacac 93  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  917381 gggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacac 917317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 12439387 - 12439297
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||   | | ||| |||||||||||||||||||    
T  12439387 attgggcttagttcataagctactctatttccctataaatagaactcatttgtaacagtgagtgagagatcggtgaataagaatactgctc 12439297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 29333701 - 29333782
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||  |||||||  ||||||||||||||    
T  29333701 ttgggcttagttcataacctactctatttccctataaataaagctcatttgtaacattg--atacacactagtgaataagaata 29333782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 12665793 - 12665709
Alignment:
Q  30 ggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctccta 119  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||||||     |||| |||||| |||||||||||||||||||||||    
T  12665793 ggcttagttcataagctactctattttcttataaatagagctcatttgta-----gatacacacattagtgaataagaatactgctccta 12665709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 16325822 - 16325745
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacaca 94  Q
    |||||| | |||||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||    
T  16325822 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacaca 16325745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 16334866 - 16334789
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacaca 94  Q
    |||||| | |||||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||    
T  16334866 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacaca 16334789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 4393841 - 4393790
Alignment:
Q  33 ttaattcataagctactctatttccctataaatagagctcatttgtaacatt 84  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  4393841 ttaattcataagctactttatttccctataaataaagctcatttgtaacatt 4393790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 55325552 - 55325631
Alignment:
Q  32 cttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatact 112  Q
    |||| ||||||| ||||| |||||||||||||||| ||||||||||| ||||||| | | |||||||||||||| ||||||    
T  55325552 cttagttcataaactactttatttccctataaataaagctcatttgttacattgaga-aaacatcagtgaataataatact 55325631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 33360263 - 33360198
Alignment:
Q  40 ataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataa 105  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||| |||  ||| |||||||||    
T  33360263 ataagctactctattttcttataaatagagctcattcgtaacattgagatatgcataagtgaataa 33360198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 48305435 - 48305352
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    |||| ||||| || ||| |||||||||||||||||||||||||| ||| |||||||||| |     |||||||||||||||||||    
T  48305435 attgagcttagtttatatgctactctatttccctataaatagagttca-ttgtaacattcagtagtacatcagtgaataagaata 48305352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 54927674 - 54927607
Alignment:
Q  325 gggtaggaaggaggcatgcatgtgtggacttaattggagtttctccgcttgtgggtttggagaccgag 392  Q
    |||||||| |||  ||||||||||||||||| ||||| ||||| || ||||||||||| | |||||||    
T  54927674 gggtaggagggaaacatgcatgtgtggacttgattggggtttccccacttgtgggtttagggaccgag 54927607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 25445163 - 25445061
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  25445163 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatactcctc 25445064  T
Q  117 cta 119  Q
    |||    
T  25445063 cta 25445061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 25454821 - 25454719
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  25454821 tactaggttattgagcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatacacacatcattgaataagaatactgctc 25454722  T
Q  117 cta 119  Q
    |||    
T  25454721 cta 25454719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 19437641 - 19437542
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  19437641 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagacacacattagtgaataagaatactgctc 19437542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 19443216 - 19443117
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  19443216 tactaggttattgggcttaattcataagctactctattttcctataaatagagctcatttgtaacattgagacacacattagtgaataagaatactgctc 19443117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 43293242 - 43293138
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  43293242 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgc 43293143  T
Q  115 tccta 119  Q
    |||||    
T  43293142 tccta 43293138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 43287497 - 43287393
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  43287497 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgc 43287398  T
Q  115 tccta 119  Q
    |||||    
T  43287397 tccta 43287393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 24056728 - 24056628
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | ||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  24056728 tactaggttattggacttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgc 24056629  T
Q  115 t 115  Q
    |    
T  24056628 t 24056628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 24053392 - 24053289
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatac--acatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||  |||| |||||||||||||| |||    
T  24053392 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaatattgagatacatacattagtgaataagaata-tgc 24053294  T
Q  115 tccta 119  Q
    |||||    
T  24053293 tccta 24053289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 31437215 - 31437273
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt 84  Q
    |||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  31437215 attgggcttagttcataagctactctattttcctataaataaagttcatttgtaacatt 31437273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 8872304 - 8872362
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt 84  Q
    |||||||||| |  ||| |||||| ||||||||||||||||||| ||||||||||||||    
T  8872304 attgggcttagtctataggctactatatttccctataaatagagttcatttgtaacatt 8872362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 31433101 - 31433167
Alignment:
Q  18 actagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt 84  Q
    ||||||| |||| ||||| |||||||| || ||||||||||||||||||  | ||||||||||||||    
T  31433101 actagtttattgagcttagttcataagatattctatttccctataaataatgttcatttgtaacatt 31433167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 35264635 - 35264542
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctccta 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35264635 attgggcttaattcataggctactctatttccctataaatagagctcatttgtaacattgagatacacatcagtgaataagaatactgctccta 35264542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 35270376 - 35270283
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctccta 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35270376 attgggcttaattcataggctactctatttccctataaatagagctcatttgtaacattgagatacacatcagtgaataagaatactgctccta 35270283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 21171291 - 21171196
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatact 112  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  21171291 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagatacacataagtgaataagaatact 21171196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 23059058 - 23058959
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  23059058 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagacacacattagtgaataagaatactgctc 23058959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 39654031 - 39653932
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39654031 tactaggttattgggcttaattcataagctactatatttccttataaatagagctcatttataacattgatatacacatcagtgaataagaatactgctc 39653932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 23053483 - 23053384
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  23053483 tactaggttattgagcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagacacacattagtgaataagaatactgctc 23053384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 16675626 - 16675711
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatact 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  16675626 ttgggcttaattcataagctactatatttccctataaatagagctcatttgtaacattgagatacacataagtgaataagaatact 16675711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 21178154 - 21178057
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctat--ttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatact 112  Q
    |||||| | ||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  21178154 tactaggttattgggcttaattcataagctactctatattttcctataaatagagctcatttgtaacattgagatacacataagtgaataagaatact 21178057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 25365498 - 25365403
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattg--atatacacatcagtgaataagaata 110  Q
    |||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||  | | |||||| ||||||||||||||    
T  25365498 tactaggttattgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgtaaaacacacattagtgaataagaata 25365403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 2135891 - 2135850
Alignment:
Q  40 ataagctactctatttccctataaatagagctcatttgtaac 81  Q
    ||||| || ||||||||| |||||||||||||||||||||||    
T  2135891 ataagttaatctatttccatataaatagagctcatttgtaac 2135850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 14080 - 14182
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  14080 tactaggttattgagcttagttcataagctactctatttccctataaatagagctcatttgtaacattgagagacacatcagtgaataagaatactgctc 14179  T
Q  117 cta 119  Q
    |||    
T  14180 cta 14182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 29176599 - 29176697
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgct 115  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  29176599 tactaggttattgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacacattagtgaataagaatactgct 29176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 29185578 - 29185676
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgct 115  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  29185578 tactaggttattgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacacattagtgaataagaatactgct 29185676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 22822601 - 22822684
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22822601 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 22822684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 22826904 - 22826987
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22826904 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 22826987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 8242596 - 8242691
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatact 112  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  | ||||||||||||||||    
T  8242596 tactagattattaggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagttacatctaagtgaataagaatact 8242691  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 8248165 - 8248260
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatact 112  Q
    |||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||  | ||||||||||||||||    
T  8248165 tactagattattaggcttaattcataagctactctattttcctataaatagagctcatttgtaacattgagttacatctaagtgaataagaatact 8248260  T

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Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 340397 - 340293
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| ||||||||||||||| ||||| | |    
T  340397 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttc 340298  T
Q  115 tccta 119  Q
    |||||    
T  340297 tccta 340293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 346631 - 346527
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||| ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| ||||||||||||||| ||||| | |    
T  346631 tactaggttattgagcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttc 346532  T
Q  115 tccta 119  Q
    |||||    
T  346531 tccta 346527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 25830483 - 25830392
Alignment:
Q  27 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctcct 118  Q
    ||||||||| | ||||||||| | |||||||||||||||||||||| |||||| ||||||   ||||| ||||||||||||||||| |||||    
T  25830483 ttgggcttagtccataagctattatatttccctataaatagagctcctttgtagcattgagggacacaccagtgaataagaatacttctcct 25830392  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 2982283 - 2982181
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctc 116  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||    
T  2982283 tactaggttattgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatatacacataagtgaataagaatatttctc 2982184  T
Q  117 cta 119  Q
    |||    
T  2982183 cta 2982181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 2978339 - 2978246
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 110  Q
    |||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2978339 tactaggttattgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 2978246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21453215 - 21453319
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  21453215 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgc 21453314  T
Q  115 tccta 119  Q
    |||||    
T  21453315 tccta 21453319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21458389 - 21458493
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  21458389 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgc 21458488  T
Q  115 tccta 119  Q
    |||||    
T  21458489 tccta 21458493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 49486819 - 49486724
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctccta 119  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  49486819 attgagcttaattcataggctactctatttctctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctccta 49486724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 49491316 - 49491224
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctc 116  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  49491316 attgagcttaattcataggctactctatttctctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctc 49491224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 21473168 - 21473263
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctccta 119  Q
    ||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  21473168 attggacttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctccta 21473263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 15752603 - 15752502
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  15752603 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgc 15752504  T
Q  115 tc 116  Q
    ||    
T  15752503 tc 15752502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 15758396 - 15758295
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  15758396 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgc 15758297  T
Q  115 tc 116  Q
    ||    
T  15758296 tc 15758295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21883479 - 21883583
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| ||||||||||||||| ||||| | |    
T  21883479 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttc 21883578  T
Q  115 tccta 119  Q
    |||||    
T  21883579 tccta 21883583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21877219 - 21877323
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||  |||| ||||||||||||||| ||||| | |    
T  21877219 tactaggttattgggcttagttcataagctactctattttcttataaatggagctcatttgtaacattgggatacacacatcagtgaataggaatatttc 21877318  T
Q  115 tccta 119  Q
    |||||    
T  21877319 tccta 21877323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21477546 - 21477650
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||| |||||   ||||||||| ||||||||||||||||  |||| ||||||| || ||||||||||||||    
T  21477546 tactaggttattgggcttagttcataagctactttatttttttataaatagggctcatttgtaacattgagatacacacatcggtaaataagaatactgc 21477645  T
Q  115 tccta 119  Q
    |||||    
T  21477646 tccta 21477650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 111939 - 112034
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctccta 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  111939 attgggcttaattcataggctactctatttccctataaatagagttcatttgtaacattgagatacacacatcagtgaataagaatactgctccta 112034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 9378 - 9481
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgc 114  Q
    |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||| |||||||| |||||||||||| | |    
T  9378 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatca-tgaataagaatatttc 9476  T
Q  115 tccta 119  Q
    |||||    
T  9477 tccta 9481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 6373 - 6280
Alignment:
Q  26 attgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatactgctccta 119  Q
    |||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||| |||   |  |||||||||||||||||| ||||||||    
T  6373 attgggcttagttcataagctactctatttccctgtaaatagaactcaattgtaacagtgagtgatgcatcagtgaataagaatattgctccta 6280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 57994 - 58071
Alignment:
Q  17 tactagttgattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacaca 94  Q
    |||||| | |||||||||| ||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||    
T  57994 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacaca 58071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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