View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15237_low_9 (Length: 438)

Name: NF15237_low_9
Description: NF15237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15237_low_9
NF15237_low_9
[»] chr6 (11 HSPs)
chr6 (1-423)||(3255239-3255661)
chr6 (203-383)||(7806374-7806554)
chr6 (203-336)||(10415851-10415984)
chr6 (64-174)||(7871828-7871938)
chr6 (203-322)||(7814433-7814552)
chr6 (65-171)||(7806227-7806333)
chr6 (203-322)||(7860357-7860476)
chr6 (121-166)||(7814595-7814640)
chr6 (347-383)||(7871601-7871637)
chr6 (208-268)||(15398755-15398815)
chr6 (208-268)||(15410542-15410602)
[»] chr4 (4 HSPs)
chr4 (210-400)||(14017997-14018187)
chr4 (64-180)||(14018235-14018351)
chr4 (303-420)||(14271569-14271686)
chr4 (205-253)||(14271738-14271786)
[»] chr1 (2 HSPs)
chr1 (203-408)||(37997164-37997369)
chr1 (64-165)||(37997010-37997111)
[»] chr7 (1 HSPs)
chr7 (204-370)||(19317231-19317397)
[»] chr5 (2 HSPs)
chr5 (206-314)||(24112215-24112323)
chr5 (345-383)||(14307920-14307958)
[»] chr3 (1 HSPs)
chr3 (121-161)||(43684938-43684978)


Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 3255239 - 3255661
Alignment:
Q  1 cagtatgaattaagtttgaaaacatcggaatgacattgaaagaggcctctttaaaccaaaagtttatgcgtagaaactcgacattatcaataccattaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255239 cagtatgaattaagtttgaaaacatcagaatgacattgaaagaggcctctttaaaccaaaagtttatgcgtagaaactcgacattatcaataccattaaa 3255338  T
Q  101 ctgagcatccacttcactagtactggctctaaccaatttaggcaaggccaaggatttaaacccttcttctggtacgttgtaactaaatgtattgatatac 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255339 ctgagcatccacttcactaatactggctctaaccaatttaggcaaggccaaggatttaaacccttcttctggtacgttgtaactaaatgtattgatatac 3255438  T
Q  201 tgagcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255439 tgagcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtg 3255538  T
Q  301 atggaagatcaacacaagaagtgtccgctccaacatttaacctttcaagtttgagaacaacaagggtttggaagatgaaaatactcggcttcaaggtgtg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255539 atggaagatcaacacaagaagtgtccgctccaacatttaacctttcaagtttgagaacaacaagggtttggaagatgaaaatactcggcttcaaggtgtg 3255638  T
Q  401 gtaatatagagtgagatgaactt 423  Q
    |||||||||||||||||||||||    
T  3255639 gtaatatagagtgagatgaactt 3255661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 203 - 383
Target Start/End: Original strand, 7806374 - 7806554
Alignment:
Q  203 agcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgat 302  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||| ||||  ||  || | |||||||||| ||||||    
T  7806374 agcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgat 7806473  T
Q  303 ggaagatcaacacaagaagtgtccgctccaacatttaacctttcaagtttgagaacaacaagggtttggaagatgaaaata 383  Q
    ||||||| |||||  ||||| |||  |||||||| ||| |||| |||||||||||||||||| |||||  ||| |||||||    
T  7806474 ggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagagtttgcgagacgaaaata 7806554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 336
Target Start/End: Complemental strand, 10415984 - 10415851
Alignment:
Q  203 agcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgat 302  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| |||||||||| ||||  ||  |||  |||||||||| |||||     
T  10415984 agcatgcaaatcttctaggataggacaagcatgaagaaaatttatgtaatcattccgattttcaaaagaaactgatatcaagcttagggttttgagtgac 10415885  T
Q  303 ggaagatcaacacaagaagtgtccgctccaacat 336  Q
     |||||| |||||| ||||| |||  ||||||||    
T  10415884 agaagatgaacacatgaagtatcctttccaacat 10415851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 7871938 - 7871828
Alignment:
Q  64 ttatgcgtagaaactcgacattatcaataccattaaactgagcatccacttcactagtactggctctaaccaatttaggcaaggccaaggatttaaaccc 163  Q
    |||||||||  ||||| |||||||||||||||||||||  |||||||| |  |||| |||| ||||||||||| |||| ||| | ||| |||||||| ||    
T  7871938 ttatgcgtaagaactcaacattatcaataccattaaacaaagcatccattgaactaatactcgctctaaccaacttagacaatgtcaaagatttaaaacc 7871839  T
Q  164 ttcttctggta 174  Q
    |||||||||||    
T  7871838 ttcttctggta 7871828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 7814552 - 7814433
Alignment:
Q  203 agcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgat 302  Q
    ||||||||||||||||||| | ||||||||| | ||||||  ||| |||||||||  ||||||||||||||||||    |||   ||| |||| || ||     
T  7814552 agcatgcaaatcttctaggttgggacaagcagaaagaaaacctatgtaatcattctgattttcaaaataaacataacttaaatgcaggattttgagcgag 7814453  T
Q  303 ggaagatcaacacaagaagt 322  Q
    ||||||||||||||||||||    
T  7814452 ggaagatcaacacaagaagt 7814433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 7806227 - 7806333
Alignment:
Q  65 tatgcgtagaaactcgacattatcaataccattaaactgagcatccact-tcactagtactggctctaaccaatttaggcaaggccaaggatttaaaccc 163  Q
    |||||||||||||| |||||||| ||||||||||||| || |||||| | || ||| ||||  ||||||||||  ||||||| | ||||| ||||| |||    
T  7806227 tatgcgtagaaacttgacattattaataccattaaacagaccatccattatcccta-tactcactctaaccaacataggcaatgtcaagggtttaagccc 7806325  T
Q  164 ttcttctg 171  Q
    ||||||||    
T  7806326 ttcttctg 7806333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 7860476 - 7860357
Alignment:
Q  203 agcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgat 302  Q
    |||||| |||||||| || |||||||||||| | |||||||| || |||||||||| ||||  ||||| |||  ||| ||||   |  ||||| || |||    
T  7860476 agcatgtaaatcttccagaataggacaagcagaaagaaaattgatgtaatcattccgatttgtaaaatgaacggatttcaaatgcaatgttttgagcgat 7860377  T
Q  303 ggaagatcaacacaagaagt 322  Q
    |||||||||||||| |||||    
T  7860376 ggaagatcaacacacgaagt 7860357  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 7814640 - 7814595
Alignment:
Q  121 tactggctctaaccaatttaggcaaggccaaggatttaaacccttc 166  Q
    |||| |||| |||||||||||| |||||||||||||| ||||||||    
T  7814640 tactagctccaaccaatttaggtaaggccaaggatttcaacccttc 7814595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 7871637 - 7871601
Alignment:
Q  347 aagtttgagaacaacaagggtttggaagatgaaaata 383  Q
    ||||||||||||||||||||||||  |||||||||||    
T  7871637 aagtttgagaacaacaagggtttgagagatgaaaata 7871601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 15398815 - 15398755
Alignment:
Q  208 gcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaa 268  Q
    |||||||||||||| |||||||||   | ||||| ||||| ||||| ||||||||||||||    
T  15398815 gcaaatcttctaggttaggacaagatgaaagaaagtttatgtaatcgttccaattttcaaa 15398755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 15410602 - 15410542
Alignment:
Q  208 gcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaa 268  Q
    |||||||||||||| |||||||||   | ||||| ||||| ||||| ||||||||||||||    
T  15410602 gcaaatcttctaggttaggacaagatgaaagaaagtttatgtaatcgttccaattttcaaa 15410542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 210 - 400
Target Start/End: Complemental strand, 14018187 - 14017997
Alignment:
Q  210 aaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgatggaagat 309  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||| |||||||    
T  14018187 aaatcttctaggataggacaaccataaagaaaatttatataatcattccaattttcaaaagaaacatattccaaattcagggttttgagtgacggaagat 14018088  T
Q  310 caacacaagaagtgtccgctccaacatttaacctttcaagtttgagaacaacaagggtttggaagatgaaaatactcggcttcaaggtgtg 400  Q
    ||||||| ||||| |||  | ||| || ||||| || ||||||||||||||||| ||||||| | ||||||| |   ||||||||||||||    
T  14018087 caacacacgaagtatccttttcaatatctaaccgttgaagtttgagaacaacaaaggtttgggatatgaaaacaacgggcttcaaggtgtg 14017997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 14018351 - 14018235
Alignment:
Q  64 ttatgcgtagaaactcgacattatcaataccattaaactgagcatccacttcactag-tactggctctaaccaatttaggcaaggccaaggatttaaacc 162  Q
    |||| |||||||| ||||||||||||||||||||||| |||||||||  || | | | |||| ||||  |||||||||| ||| | ||||||||||||||    
T  14018351 ttatccgtagaaattcgacattatcaataccattaaaatgagcatcc-tttgaatcgatacttgctcggaccaatttagccaatgtcaaggatttaaacc 14018253  T
Q  163 cttcttctggtacgttgt 180  Q
    || | |||||||| ||||    
T  14018252 ctacgtctggtacattgt 14018235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 420
Target Start/End: Complemental strand, 14271686 - 14271569
Alignment:
Q  303 ggaagatcaacacaagaagtgtccgctccaacatttaacctttcaagtttgagaacaacaagggtttggaagatgaaaatactcggcttcaaggtgtggt 402  Q
    |||||||||||||||||||| | |  | ||||||   || ||||  ||||||||||||||||| ||||| |||| |||||| | ||||| || |||||||    
T  14271686 ggaagatcaacacaagaagtattctttacaacataatacttttcctgtttgagaacaacaaggatttgggagataaaaataataggcttgaatgtgtggt 14271587  T
Q  403 aatatagagtgagatgaa 420  Q
    |||| | |||||| ||||    
T  14271586 aatacaaagtgaggtgaa 14271569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 14271786 - 14271738
Alignment:
Q  205 catgcaaatcttctaggataggacaagcatagagaaaatttatataatc 253  Q
    |||| ||||||| |||||||||| ||||||| |||||||||||||||||    
T  14271786 catgtaaatcttataggataggagaagcataaagaaaatttatataatc 14271738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 203 - 408
Target Start/End: Original strand, 37997164 - 37997369
Alignment:
Q  203 agcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgat 302  Q
    |||||| |||||||| ||||||||||||||  | |||||||| || ||||| |||  ||||| |||||| ||  ||| ||||   |||||||| || |||    
T  37997164 agcatgaaaatcttcaaggataggacaagcggaaagaaaattaatgtaatccttctgatttttaaaatacactaattgcaaataaagggttttcagcgat 37997263  T
Q  303 ggaagatcaacacaagaagtgtccgctccaacatttaacctttcaagtttgagaacaacaagggtttggaagatgaaaatactcggcttcaaggtgtggt 402  Q
    ||||||||||||||  |||| ||   ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||    
T  37997264 ggaagatcaacacacaaagtatcatttccaacatttaaccttttaagtttgagaacaacaagggtttgggagatgaaaataatgggcttcaagttgtggt 37997363  T
Q  403 aatata 408  Q
    ||||||    
T  37997364 aatata 37997369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 37997010 - 37997111
Alignment:
Q  64 ttatgcgtagaaactcgacattatcaataccattaaactgagcatccacttcactagtactggctctaaccaatttaggcaaggccaaggatttaaaccc 163  Q
    |||| |||||||| || ||||||| ||||||||||||  || |||||| |  |||  | || ||||||| |||||||| ||||| ||||||||| |||||    
T  37997010 ttatacgtagaaattcaacattattaataccattaaatagaacatccattgaactgattctcgctctaatcaatttagacaaggtcaaggatttcaaccc 37997109  T
Q  164 tt 165  Q
    ||    
T  37997110 tt 37997111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 19317231 - 19317397
Alignment:
Q  204 gcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgatg 303  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||  |||| ||||||||||| |||||||||  ||  || | |||||||||| |||||||    
T  19317231 gcatacaaatcttctaagataggacaagcataaagaaaatttacgtaattattccaattttgaaaataaactgatgtcagatttagggttttaagtgatg 19317330  T
Q  304 gaagatcaacacaagaagtgtccgctccaacatttaacctttcaagtttgagaacaacaagggtttg 370  Q
    |||||| |||||| |||||  ||  |||||||| ||| ||||||||||| |||||||||||||||||    
T  19317331 gaagatgaacacacgaagtaccctttccaacatataaactttcaagttttagaacaacaagggtttg 19317397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 24112323 - 24112215
Alignment:
Q  206 atgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgatgga 305  Q
    ||||||||||| ||| |||||||||||||  ||||  || ||  ||||||||  ||||||| || ||||||||| ||||  |||| |||| || ||||||    
T  24112323 atgcaaatcttgtagaataggacaagcattaagaagcttaatgaaatcattctgattttcacaacaaacatatttcaaacctaggattttgagagatgga 24112224  T
Q  306 agatcaaca 314  Q
    |||||||||    
T  24112223 agatcaaca 24112215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 14307958 - 14307920
Alignment:
Q  345 tcaagtttgagaacaacaagggtttggaagatgaaaata 383  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  14307958 tcaagtttgagaacaacaagggtttggaaggtaaaaata 14307920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 43684938 - 43684978
Alignment:
Q  121 tactggctctaaccaatttaggcaaggccaaggatttaaac 161  Q
    |||||||||||||||| |||| ||||| |||||||||||||    
T  43684938 tactggctctaaccaacttagacaaggacaaggatttaaac 43684978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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