View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15238_high_3 (Length: 248)
Name: NF15238_high_3
Description: NF15238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15238_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 39791755 - 39792003
Alignment:
| Q |
1 |
catacaattttaaacgaaatttacttccagtttgaaaagtatgcatgtaagtgagagttgtgagttaattaa------------cttggtatcgagaccc |
88 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
39791755 |
catacaattttaaatgaaatttacttccagtttgaaaagtatgcatgtaagtgagagttgtgagttaattaatatgcgattatacttgataacgagaccc |
39791854 |
T |
|
| Q |
89 |
ttaattaacgtggtggtgctacctttgttct---aatttggttccaacttataatcccattcacttcatatttacttgagaagaggcatttcccttaaca |
185 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39791855 |
ttaattaatgtggtggtgctacctttgttcttctaatttggttccaacttgtaatcccattcacttcatatttacttgagaagaggcatttcccttaaca |
39791954 |
T |
|
| Q |
186 |
tatagttcaaacattttattccaaatgggagatgattttaaagtttttg |
234 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39791955 |
tatagttcaaacattttattctaaatgggagatgattttaaagtttttg |
39792003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39780624 - 39780667
Alignment:
| Q |
1 |
catacaattttaaacgaaatttacttccagtttgaaaagtatgc |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39780624 |
catacaattttaaacgaaatttacttccagtttgtaaagtatgc |
39780667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University