View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15238_low_1 (Length: 493)
Name: NF15238_low_1
Description: NF15238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15238_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Complemental strand, 1351180 - 1350710
Alignment:
| Q |
17 |
aggcaccccattacttatactttcaattgttgaattccaaccacagtgactcaaaaaccctcccactgctttgtgctttagaactttctcttgtggacac |
116 |
Q |
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| T |
1351180 |
aggcaccccattacttatactttcaattgttgaattccaaccacagtgactcaaaaaccctcccactgctttgtgctttagaactttctcttgtggacac |
1351081 |
T |
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| Q |
117 |
caacctaccattagtcctctatctttggtttcttccacaatttcttgtggcacaagcaatgtttcactttcacccttaactaaatcaggcctaatcaccc |
216 |
Q |
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| T |
1351080 |
caacctaccattagtcctctatctttggtttcttccacaatttcttgtggcacaagcaatgtttcactttcacccttaactaaatcaggcctaatcaccc |
1350981 |
T |
|
| Q |
217 |
acaagaactttttcttactatttgctaatccccatgccaattcaactagctggttatacttcatgactataacacttccaaaattcacatagagaacaga |
316 |
Q |
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| T |
1350980 |
acaagaactttttcttgctatttgctaatccccatgccaattcaactagctggttatacttcatgactataacacttccaaaattcacatagagaacaga |
1350881 |
T |
|
| Q |
317 |
attttcttcctgtgaatctagccatttgagacactcactctcttctttccacaaattgcattgaatagattcaaatccattattttctgaaattttatca |
416 |
Q |
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| T |
1350880 |
attttcttcctgtgaatctagccatttgagacactcactctcttctttccacaaattgcattgaatagattcaaatccattattttctgaaattttatca |
1350781 |
T |
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| Q |
417 |
aggaacaaatcaagtgggcctaatgtgtagagtttaggaaacattgtggagagctcattcaatacatcata |
487 |
Q |
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| T |
1350780 |
aggaacaaatcaagtgggcctaatgtgtagagtttaggaaacattgtggagagctcattcaatacatcata |
1350710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 4560855 - 4560896
Alignment:
| Q |
99 |
actttctcttgtggacaccaacctaccattagtcctctatct |
140 |
Q |
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| T |
4560855 |
actttctcttgtggacaccaacttgctattagtcctctatct |
4560896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 4574657 - 4574698
Alignment:
| Q |
99 |
actttctcttgtggacaccaacctaccattagtcctctatct |
140 |
Q |
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| T |
4574657 |
actttctcttgtggacaccaacttgctattagtcctctatct |
4574698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 1965248 - 1965204
Alignment:
| Q |
35 |
actttcaattgttgaattccaaccacagtgactcaaaaaccctcc |
79 |
Q |
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| T |
1965248 |
actttcaagggttgagttccaaccacagtgactcaagaaccctcc |
1965204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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