View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15238_low_2 (Length: 354)
Name: NF15238_low_2
Description: NF15238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15238_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 45328203 - 45328540
Alignment:
| Q |
1 |
ctcatcctaccttttgcaacatcaactatataatccctagcagtaaacccttctctagcacccatttgaagccctgttaaaatcgtattctcttgcaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45328203 |
ctcatcctaccttttgcaacatcaactatataatccctagcagtaaacccttctctagcacccatttgaagcccggttaaaatcgtattctcttgcaaat |
45328302 |
T |
|
| Q |
101 |
ccaaaacaaaattaacaagtccacttaagagtatatcaatgaatccaaaacccactaaaacaaaaacacaagcaaagagtttagtcattggtgttaaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45328303 |
ccaaaacaaaattaacaagtccacttaagagtatatctatgaatccaaaacccactaaaacaaaaacacaagcaaagagtttagtcattggtgttaaagg |
45328402 |
T |
|
| Q |
201 |
agctatgtctccataaccaattgtacacatggtgactatacaaaaataaagagcatcaacaacagggtgagtttcaatgccagagaaattttttgtgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45328403 |
agctatgtctccataaccaattgtacacatggtgactatacaaaaataaagagcatcaacaacagggtgagtttcaatgccagagaaattttttgtgttg |
45328502 |
T |
|
| Q |
301 |
aaagagtatattatgacaccgacagagaggtatataag |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45328503 |
aaagagtatattatgacaccgacagagaggtatataag |
45328540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University