View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15239_high_3 (Length: 327)
Name: NF15239_high_3
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 46470417 - 46470117
Alignment:
| Q |
12 |
attcttaaaggtgatttgttcacgtgggttcattcatccatagatggtaaaagcaagagacgtggctatagaacggaaccataaaagtgctacactgaga |
111 |
Q |
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| T |
46470417 |
attcttaaaggtgatttgttcacgtgggttcattcatccatagatggtaaaagcaagagacgtggctatagaacggaaccataaaagtgctacactgaga |
46470318 |
T |
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| Q |
112 |
atttgaggttgtcctagcttgttcacttggaatcaggacggaaccataaaaatttgtggaagggggcaaaaataacccgtgtattgtagagtcattttct |
211 |
Q |
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| T |
46470317 |
atttgaggttgtcctagcttgttcacttggaatcaggacggaaccataaaaatttgtggaagggggcaaaaataacccgtgtattgtagagtcattttct |
46470218 |
T |
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| Q |
212 |
ttattgaaaccgtataaattaatccatttttattgtgttttaattttcttattgtatttaataactcattataa-aaaatacattttactaattcaattg |
310 |
Q |
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| T |
46470217 |
ttattgaaaccgtataaattaatccatttttattgtgttttaattttcttattgtatttaataactcattataaaaaaatacattttactaattcaattg |
46470118 |
T |
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| Q |
311 |
t |
311 |
Q |
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| T |
46470117 |
t |
46470117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 46465310 - 46465248
Alignment:
| Q |
14 |
tcttaaaggtgatttgttcacgtgggttcattcatccatagatggtaaaagcaagagacgtgg |
76 |
Q |
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|||||||| | ||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
46465310 |
tcttaaagttaattggttcacgtgggttcatttgtccatagatggtaaaagcatgagacgtgg |
46465248 |
T |
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