View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15239_high_5 (Length: 317)
Name: NF15239_high_5
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 1452846 - 1453130
Alignment:
| Q |
14 |
tactttaacaaaagaatactctaaaactcccctaaaaggggaagnnnnnnntatactcaagggccctcgttgcgagtttgtaggagagggggagggaaag |
113 |
Q |
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| T |
1452846 |
tactttaacaaaagaatactctaaaactcccctaaaaggggaagaaaaaaa-atactctagggctctagttgcgagtttgtaggagagggggaggggaag |
1452944 |
T |
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| Q |
114 |
gaagggtttnnnnnnngaagaaggagaggtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaatttct |
213 |
Q |
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| T |
1452945 |
gaagggtttaaaaaa--aagaaggagaagtggaaagaatagagagctttagaagagga---ctttgagcggtttagttttcttcataatataaaatttct |
1453039 |
T |
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| Q |
214 |
ctaatttagtgaaacaaaaaattgtgaaa--acaatgtttctgaacatgaccatggaacattcaatttacacatcatatgcgggatgattt |
302 |
Q |
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| T |
1453040 |
ctaatttagtggaaaaaaaaattgtgaaaacacaatgtttctaaacatgaccatggaacattcaatttacacatcatatgtgggatgattt |
1453130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 51936393 - 51936357
Alignment:
| Q |
186 |
ttagttttcttcataatataaaatttctctaatttag |
222 |
Q |
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| T |
51936393 |
ttagttttcttcataatacaaaatctctctaatttag |
51936357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 15899422 - 15899368
Alignment:
| Q |
235 |
ttgtgaaaacaatgtttct-gaacatgaccatggaacattcaatttacacatcat |
288 |
Q |
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| T |
15899422 |
ttgtgaaaacaatgtgtcttgagcatgaccatggaacattcaatttacgcatcat |
15899368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 37908934 - 37909003
Alignment:
| Q |
140 |
aggtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaat |
209 |
Q |
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| T |
37908934 |
aggtggaaagaatcgagtgttttggcagaggagggctttggggggtttaattttcttcataatacaaaat |
37909003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 8828479 - 8828557
Alignment:
| Q |
142 |
gtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaatttctctaattt |
220 |
Q |
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| T |
8828479 |
gtggaaagaatgaagagctttgagaggggagagctttgcggggtttaattttcttcataatacaaaattcctctaattt |
8828557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 19153986 - 19154064
Alignment:
| Q |
142 |
gtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaatttctctaattt |
220 |
Q |
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| T |
19153986 |
gtggaaagaatggagagctttgggaggggagggctttgaggggcttagttttcttcataatacagaattcccctaattt |
19154064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 6973730 - 6973664
Alignment:
| Q |
142 |
gtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaat |
209 |
Q |
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| T |
6973730 |
gtggaaagaatggagagctttgggag-ggaggactttcaggggtttaattttcttcgtaatataaaat |
6973664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 22845352 - 22845285
Alignment:
| Q |
142 |
gtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaat |
209 |
Q |
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||||||||||| ||||||||| || |||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
22845352 |
gtggaaagaatgaagagctttgagaggggagggctttgaggggtttagttttcttcataatacaaaat |
22845285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 31601858 - 31601895
Alignment:
| Q |
183 |
ggtttagttttcttcataatataaaatttctctaattt |
220 |
Q |
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| T |
31601858 |
ggtttagttttcttcataatataaaatctctataattt |
31601895 |
T |
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