View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15239_low_11 (Length: 281)
Name: NF15239_low_11
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 30250515 - 30250237
Alignment:
| Q |
3 |
gagtgagatgaacaatgcagctattaaatcaaatgacaaacaatatagcatattcaaactaatgcacaatttactcgctcatattcaaaaccatacaaaa |
102 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30250515 |
gagtgaaataaacaatgcagctattaaatcaaatgacaaacaatatagcatattcaaactaatgcacaatttactcgctcatattcaaaaccatacaaaa |
30250416 |
T |
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| Q |
103 |
cgaagactttactgagactcattctttgtaatatatgtttcctatagttgagttggatcattcatttgcattctgcgaagcaatcagttaatcatctttc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30250415 |
cgaagactttactgagactcattctttgtaatatatgtttcctatagttgagttggatcattcatttgcattctgcaaagcaatcagttaatcatctttc |
30250316 |
T |
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| Q |
203 |
tttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaatagctatagaaacataacagact |
281 |
Q |
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| T |
30250315 |
tttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaatagctatagaaacataacagact |
30250237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 25629417 - 25629357
Alignment:
| Q |
185 |
atcagttaatcatctttctttaaagcatttcaaataacttgatattttcatcaagtcaaac |
245 |
Q |
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| T |
25629417 |
atcagttaatcatcttgctttaaagcatttcaaataacttgatatcttcatcaagtcaaac |
25629357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 96 - 261
Target Start/End: Original strand, 29351880 - 29352046
Alignment:
| Q |
96 |
tacaaaacgaagactttactgagactcattctttgtaatatatgtttcctatagttgagtt-ggatcattcatttgcattctgcgaagcaatcagttaat |
194 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||| |
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| T |
29351880 |
tacaaaatcaagactttactgagactccttctttgtaatatatgtttcctatagttgagtttggatcattcatttgcattcggcaaaacaatcagttaaa |
29351979 |
T |
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| Q |
195 |
catctttctttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaatag |
261 |
Q |
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| T |
29351980 |
catctttgtttgaagcatttcaaataacatgatattttcatcaagtcaaacgtatactttcaaatag |
29352046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 34325822 - 34325716
Alignment:
| Q |
153 |
agttggatcattcatttgcattctgcgaagcaatcagttaatcatctttctttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatact |
252 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34325822 |
agttggatcattcatttgcattctgcaaaacaatcagttaatcatctttctttaaggcatttcaaataacttgatattttcatcaagtcaaacgtatact |
34325723 |
T |
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| Q |
253 |
ttcaaat |
259 |
Q |
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||||||| |
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| T |
34325722 |
ttcaaat |
34325716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 4028427 - 4028366
Alignment:
| Q |
198 |
ctttctttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaat |
259 |
Q |
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| T |
4028427 |
ctttctttaaggcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaat |
4028366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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