View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15239_low_13 (Length: 240)
Name: NF15239_low_13
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3789995 - 3789768
Alignment:
| Q |
1 |
ttgatcatgttccattgtttgtgatatatgtttctatactcttttgttactaatttccgatataacataatttcgagctgaggttgagattaacata--g |
98 |
Q |
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| T |
3789995 |
ttgatcatgttccattgtttgtgatatatgtttctatactcttttgttactaatttctgatgtaacataatttcgagcttaggttgagattaacatatag |
3789896 |
T |
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| Q |
99 |
aatacttcatgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcc |
198 |
Q |
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| T |
3789895 |
aatacttcatgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcc |
3789796 |
T |
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| Q |
199 |
catggcgcggcgtagataagatcttctt |
226 |
Q |
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| T |
3789795 |
catggcgcggcgtagataagatcttctt |
3789768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 3800118 - 3800333
Alignment:
| Q |
8 |
tgttccattgtttgtgatatatgtttctatactcttttgttactaatttccgatataacataatttcgagctgaggttgagattaacatagaatacttca |
107 |
Q |
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|||| |||||||| |||| | ||| ||| || ||||||||||||| || || ||||||||||||||||| ||||||| | ||||| |||| |||| |
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| T |
3800118 |
tgtttcattgtttatgatttctgtctctttaatcttttgttactagttgttgaggtaacataatttcgagctttggttgagttcaacatcaaatatttca |
3800217 |
T |
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| Q |
108 |
tgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcccatggcgcg |
207 |
Q |
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||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| | |
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| T |
3800218 |
tgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgatggacacaacaaacatcccatggcgtg |
3800317 |
T |
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| Q |
208 |
gcgtagataagatctt |
223 |
Q |
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| T |
3800318 |
gcgtagataagatctt |
3800333 |
T |
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