View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15239_low_14 (Length: 237)
Name: NF15239_low_14
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30250205 - 30249983
Alignment:
| Q |
1 |
cataattataaaatggttaattaatttttcatatatatactacatatatgataatgagtgattgacaaaccactttttattactcaaggtaaaaatgatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30250205 |
cataattataaaatggttaattaatttttcatatatatactacatatatgataatgagtgattgacaaaccactttttattactcaaggtaaaaatgatc |
30250106 |
T |
|
| Q |
101 |
ataaatctcttagttgaaaacaagaaaaccaactaatgtgtgatccaattcgataaaccactttttcttgtaagttattctatttgatggtggttcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30250105 |
ataaatctcttagttgaaaacaagaaaaccaactaatgtgtgatccaattcgataaaccactttttcttgtaagttattctatttgatggtggttcttca |
30250006 |
T |
|
| Q |
201 |
agactgatttcctcaaacatgtg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
30250005 |
agactgatttcctcaaacatgtg |
30249983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 25628953 - 25628917
Alignment:
| Q |
46 |
atatgataatgagtgattgacaaaccactttttatta |
82 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
25628953 |
atatgataattggtgattgacaaaccactttttatta |
25628917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 34325610 - 34325485
Alignment:
| Q |
98 |
atcataaatctcttagttgaaaacaagaaaaccaactaatgtgtgatccaattcgataaaccactttttcttgtaagttattctatttgatggtggttct |
197 |
Q |
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| T |
34325610 |
atcataaatctcttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttct |
34325511 |
T |
|
| Q |
198 |
tcaagactgatttcctcaaacatgtg |
223 |
Q |
| |
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||||||| || |||||||| |||||| |
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| T |
34325510 |
tcaagaccgagttcctcaaccatgtg |
34325485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 29352142 - 29352313
Alignment:
| Q |
47 |
tatgataatgagtgattgacaaaccactttttattactcaaggtaaaa--------------atgatcataaatctcttagttgaaaacaagaaaaccaa |
132 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||| | ||| |||||||||||||| | |||||||||||||| |
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| T |
29352142 |
tatgataatgagtgatttacaaaccactttttattattcaaggtaaaatgatcctaataaacagaatcgtaaatctcttagtttagaacaagaaaaccaa |
29352241 |
T |
|
| Q |
133 |
ctaatgtgtgatccaattcgataaaccactttttcttgtaagttattctatttgatggtggttcttcaagac |
204 |
Q |
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||||| ||| || ||| | |||||||| |||||||||| |||||||||||||||||| ||||||||||| |
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| T |
29352242 |
ctaatctgttattggatttgtcaaaccactctttcttgtaaattattctatttgatggtgcttcttcaagac |
29352313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4028318 - 4028078
Alignment:
| Q |
1 |
cataattataaaatggttaattaatttttcatatat---atactacata--tatgataatgagtgattgacaaaccactttttattactcaaggtaaaa- |
94 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| ||| | |||| ||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
4028318 |
cataattataaaatgctttattaatttttcatatactgcataat-cataattatgataatgaatgattgacaaaccactttttattatccaaggtaaaat |
4028220 |
T |
|
| Q |
95 |
-------------atgatcataaatctcttagttgaaaacaagaaaaccaactaatg-tgtgatccaattcgataaaccactttttcttgtaagttattc |
180 |
Q |
| |
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| |||||||||||||||||||| |||||||||||||||||||| | | | |||| || ||||||||||||||||||| |||||| |
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| T |
4028219 |
gatcctaataaacagaatcataaatctcttagttgagaacaagaaaaccaactaatgatttactggaatt-gacaaaccactttttcttgtaaattattc |
4028121 |
T |
|
| Q |
181 |
tatttgatggtggttcttcaagactgatttcctcaaacatgtg |
223 |
Q |
| |
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|||||||||||| ||||||||||| || |||||||| |||||| |
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| T |
4028120 |
tatttgatggtgcttcttcaagaccgagttcctcaaccatgtg |
4028078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 31778246 - 31778198
Alignment:
| Q |
46 |
atatgataatgagtgattgacaaaccactttttattactcaaggtaaaa |
94 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| ||||| |
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| T |
31778246 |
atatgataatgggtgattgacaaaccactttttattattcaagataaaa |
31778198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 30651900 - 30651864
Alignment:
| Q |
46 |
atatgataatgagtgattgacaaaccactttttatta |
82 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |
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|
| T |
30651900 |
atatgataatgggtgattgataaaccactttttatta |
30651864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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