View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15239_low_15 (Length: 235)
Name: NF15239_low_15
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 4745210 - 4745321
Alignment:
| Q |
13 |
atagaagcacggcgacaacgacaaaagggatcaatacacaccggaacaaggggatatgcacaactacgaattctacaatcaaaatcttccttacaccttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4745210 |
atagaagcacggcgacaacgacaaaagggatcaatacacactggaataaggggatatgcacaactacgaattctacaatcaaaatcttccttacaccttt |
4745309 |
T |
|
| Q |
113 |
tctgtgctgcaa |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4745310 |
tctgtgctgcaa |
4745321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 4745355 - 4745432
Alignment:
| Q |
145 |
aaggaacatatattaaaggaga-agcataggggatcaaatattttgtatataataagataaacaagaaagttcaaaag |
221 |
Q |
| |
|
|||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4745355 |
aaggaacaaatattaaaggagatattaaaggggatcaaatattttgtatataataagataaacaagaaagttcaaaag |
4745432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 4740022 - 4740118
Alignment:
| Q |
25 |
cgacaacgacaaaagggatcaatacacaccggaacaaggggatatgcacaactacgaattctacaatcaaaatcttccttacaccttttctgtgctg |
121 |
Q |
| |
|
||||||||||||| | ||||||||||||| | |||| |||||| |||| |||| || ||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
4740022 |
cgacaacgacaaaggcgatcaatacacactgaaacagtaggatatacacacatacgcatcctacaatcaaaatctaccctacaccttttatgtgctg |
4740118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University